Patch Set 3:

please fix line endings, diffs are currently rendered useless by wrong line endings. We use UTF-8 text encoding and unix text file line delimiters (LF) (see Eclipse Preferences > General > Workspace)

Assuming that bug tracker and repository are on the same host IMHO doesn't work (at least it doesn't work for any of the projects I am participating in). I think we need to store the association between bug tracker base url and git repository. Assuming that all bugs for a given repository are tracked in the same bug tracker seems reasonable to me. Maybe we should simply store this as a repository configuration parameter ?