org.eclipse.jgit.diff

Class HistogramDiff

java.lang.Object

org.eclipse.jgit.diff.DiffAlgorithm

org.eclipse.jgit.diff.LowLevelDiffAlgorithm

org.eclipse.jgit.diff.HistogramDiff

public class HistogramDiff
extends LowLevelDiffAlgorithm

An extended form of Bram Cohen's patience diff algorithm.

This implementation was derived by using the 4 rules that are outlined in Bram Cohen's blog, and then was further extended to support low-occurrence common elements.

The basic idea of the algorithm is to create a histogram of occurrences for each element of sequence A. Each element of sequence B is then considered in turn. If the element also exists in sequence A, and has a lower occurrence count, the positions are considered as a candidate for the longest common subsequence (LCS). After scanning of B is complete the LCS that has the lowest number of occurrences is chosen as a split point. The region is split around the LCS, and the algorithm is recursively applied to the sections before and after the LCS.

By always selecting a LCS position with the lowest occurrence count, this algorithm behaves exactly like Bram Cohen's patience diff whenever there is a unique common element available between the two sequences. When no unique elements exist, the lowest occurrence element is chosen instead. This offers more readable diffs than simply falling back on the standard Myers' O(ND) algorithm would produce.

To prevent the algorithm from having an O(N^2) running time, an upper limit on the number of unique elements in a histogram bucket is configured by setMaxChainLength(int). If sequence A has more than this many elements that hash into the same hash bucket, the algorithm passes the region to setFallbackAlgorithm(DiffAlgorithm). If no fallback algorithm is configured, the region is emitted as a replace edit.

During scanning of sequence B, any element of A that occurs more than setMaxChainLength(int) times is never considered for an LCS match position, even if it is common between the two sequences. This limits the number of locations in sequence A that must be considered to find the LCS, and helps maintain a lower running time bound.

So long as setMaxChainLength(int) is a small constant (such as 64), the algorithm runs in O(N * D) time, where N is the sum of the input lengths and D is the number of edits in the resulting EditList. If the supplied SequenceComparator has a good hash function, this implementation typically out-performs MyersDiff, even though its theoretical running time is the same.

This implementation has an internal limitation that prevents it from handling sequences with more than 268,435,456 (2^28) elements.

Nested Class Summary

Nested classes/interfaces inherited from class org.eclipse.jgit.diff.DiffAlgorithm

DiffAlgorithm.SupportedAlgorithm

Constructor Summary

Constructors

Constructor and Description
HistogramDiff()

Method Summary

Methods

Modifier and Type	Method and Description
<S extends Sequence> void	diffNonCommon(EditList edits, HashedSequenceComparator<S> cmp, HashedSequence<S> a, HashedSequence<S> b, Edit region) Compare two sequences and identify a list of edits between them.
void	setFallbackAlgorithm(DiffAlgorithm alg) Set the algorithm used when there are too many element occurrences.
void	setMaxChainLength(int maxLen) Maximum number of positions to consider for a given element hash.

Methods inherited from class org.eclipse.jgit.diff.LowLevelDiffAlgorithm

diffNonCommon

Methods inherited from class org.eclipse.jgit.diff.DiffAlgorithm

diff, getAlgorithm

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HistogramDiff

public HistogramDiff()

Method Detail

setFallbackAlgorithm

public void setFallbackAlgorithm(DiffAlgorithm alg)

Set the algorithm used when there are too many element occurrences.

Parameters:

alg - the secondary algorithm. If null the region will be denoted as a single REPLACE block.

setMaxChainLength

public void setMaxChainLength(int maxLen)

Maximum number of positions to consider for a given element hash. All elements with the same hash are stored into a single chain. The chain size is capped to ensure search is linear time at O(len_A + len_B) rather than quadratic at O(len_A * len_B).

Parameters:

maxLen - new maximum length.

diffNonCommon

public <S extends Sequence> void diffNonCommon(EditList edits,
                                      HashedSequenceComparator<S> cmp,
                                      HashedSequence<S> a,
                                      HashedSequence<S> b,
                                      Edit region)

Description copied from class: LowLevelDiffAlgorithm

Compare two sequences and identify a list of edits between them. This method should be invoked only after the two sequences have been proven to have no common starting or ending elements. The expected elimination of common starting and ending elements is automatically performed by the DiffAlgorithm.diff(SequenceComparator, Sequence, Sequence) method, which invokes this method using Subsequences.

Specified by:

diffNonCommon in class LowLevelDiffAlgorithm

Type Parameters:

S - type of sequence being compared.

Parameters:

edits - result list to append the region's edits onto.

cmp - the comparator supplying the element equivalence function.

a - the first (also known as old or pre-image) sequence. Edits returned by this algorithm will reference indexes using the 'A' side: Edit.getBeginA(), Edit.getEndA().

b - the second (also known as new or post-image) sequence. Edits returned by this algorithm will reference indexes using the 'B' side: Edit.getBeginB(), Edit.getEndB().

region - the region being compared within the two sequences.