/*
    * Copyright (C) 2008-2011, Google Inc.
    * Copyright (C) 2007-2008, Robin Rosenberg <robin.rosenberg@dewire.com>
    * Copyright (C) 2008, Shawn O. Pearce <spearce@spearce.org>
    * and other copyright owners as documented in the project's IP log.
    *
    * This program and the accompanying materials are made available
    * under the terms of the Eclipse Distribution License v1.0 which
    * accompanies this distribution, is reproduced below, and is
   * available at http://www.eclipse.org/org/documents/edl-v10.php
   *
   * All rights reserved.
   *
   * Redistribution and use in source and binary forms, with or
   * without modification, are permitted provided that the following
   * conditions are met:
   *
   * - Redistributions of source code must retain the above copyright
   *   notice, this list of conditions and the following disclaimer.
   *
   * - Redistributions in binary form must reproduce the above
   *   copyright notice, this list of conditions and the following
   *   disclaimer in the documentation and/or other materials provided
   *   with the distribution.
   *
   * - Neither the name of the Eclipse Foundation, Inc. nor the
   *   names of its contributors may be used to endorse or promote
   *   products derived from this software without specific prior
   *   written permission.
   *
   * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
   * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
   * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
   * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
   * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
   * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
   * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
   * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
   * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
   * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
   * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
   * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
   * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
   */
  
  package org.eclipse.jgit.transport;
  
  import java.io.EOFException;
  import java.io.IOException;
  import java.io.InputStream;
  import java.security.MessageDigest;
  import java.text.MessageFormat;
  import java.util.ArrayList;
  import java.util.Arrays;
  import java.util.Comparator;
  import java.util.List;
  import java.util.concurrent.TimeUnit;
  import java.util.zip.DataFormatException;
  import java.util.zip.Inflater;
  
  import org.eclipse.jgit.errors.CorruptObjectException;
  import org.eclipse.jgit.errors.MissingObjectException;
  import org.eclipse.jgit.errors.TooLargeObjectInPackException;
  import org.eclipse.jgit.internal.JGitText;
  import org.eclipse.jgit.internal.storage.file.PackLock;
  import org.eclipse.jgit.internal.storage.pack.BinaryDelta;
  import org.eclipse.jgit.lib.AnyObjectId;
  import org.eclipse.jgit.lib.BatchingProgressMonitor;
  import org.eclipse.jgit.lib.BlobObjectChecker;
  import org.eclipse.jgit.lib.Constants;
  import org.eclipse.jgit.lib.InflaterCache;
  import org.eclipse.jgit.lib.MutableObjectId;
  import org.eclipse.jgit.lib.NullProgressMonitor;
  import org.eclipse.jgit.lib.ObjectChecker;
  import org.eclipse.jgit.lib.ObjectDatabase;
  import org.eclipse.jgit.lib.ObjectId;
  import org.eclipse.jgit.lib.ObjectIdOwnerMap;
  import org.eclipse.jgit.lib.ObjectIdSubclassMap;
  import org.eclipse.jgit.lib.ObjectLoader;
  import org.eclipse.jgit.lib.ObjectReader;
  import org.eclipse.jgit.lib.ObjectStream;
  import org.eclipse.jgit.lib.ProgressMonitor;
  import org.eclipse.jgit.util.BlockList;
  import org.eclipse.jgit.util.IO;
  import org.eclipse.jgit.util.LongMap;
  import org.eclipse.jgit.util.NB;
  import org.eclipse.jgit.util.sha1.SHA1;
  
  /**
   * Parses a pack stream and imports it for an
   * {@link org.eclipse.jgit.lib.ObjectInserter}.
   * <p>
   * Applications can acquire an instance of a parser from ObjectInserter's
   * {@link org.eclipse.jgit.lib.ObjectInserter#newPackParser(InputStream)}
   * method.
   * <p>
   * Implementations of {@link org.eclipse.jgit.lib.ObjectInserter} should
   * subclass this type and provide their own logic for the various {@code on*()}
   * event methods declared to be abstract.
  */
 public abstract class PackParser {
 	/** Size of the internal stream buffer. */
 	private static final int BUFFER_SIZE = 8192;
 
 	/** Location data is being obtained from. */
 	public static enum Source {
 		/** Data is read from the incoming stream. */
 		INPUT,
 
 		/** Data is read back from the database's buffers. */
 		DATABASE;
 	}
 
 	/** Object database used for loading existing objects. */
 	private final ObjectDatabase objectDatabase;
 
 	private InflaterStream inflater;
 
 	private byte[] tempBuffer;
 
 	private byte[] hdrBuf;
 
 	private final SHA1 objectHasher = SHA1.newInstance();
 	private final MutableObjectId tempObjectId;
 
 	private InputStream in;
 
 	byte[] buf;
 
 	/** Position in the input stream of {@code buf[0]}. */
 	private long bBase;
 
 	private int bOffset;
 
 	int bAvail;
 
 	private ObjectChecker objCheck;
 
 	private boolean allowThin;
 
 	private boolean checkObjectCollisions;
 
 	private boolean needBaseObjectIds;
 
 	private boolean checkEofAfterPackFooter;
 
 	private boolean expectDataAfterPackFooter;
 
 	private long expectedObjectCount;
 
 	private PackedObjectInfo[] entries;
 
 	/**
 	 * Every object contained within the incoming pack.
 	 * <p>
 	 * This is a subset of {@link #entries}, as thin packs can add additional
 	 * objects to {@code entries} by copying already existing objects from the
 	 * repository onto the end of the thin pack to make it self-contained.
 	 */
 	private ObjectIdSubclassMap<ObjectId> newObjectIds;
 
 	private int deltaCount;
 
 	private int entryCount;
 
 	private ObjectIdOwnerMap<DeltaChain> baseById;
 
 	/**
 	 * Objects referenced by their name from deltas, that aren't in this pack.
 	 * <p>
 	 * This is the set of objects that were copied onto the end of this pack to
 	 * make it complete. These objects were not transmitted by the remote peer,
 	 * but instead were assumed to already exist in the local repository.
 	 */
 	private ObjectIdSubclassMap<ObjectId> baseObjectIds;
 
 	private LongMap<UnresolvedDelta> baseByPos;
 
 	/** Objects need to be double-checked for collision after indexing. */
 	private BlockList<PackedObjectInfo> collisionCheckObjs;
 
 	private MessageDigest packDigest;
 
 	private ObjectReader readCurs;
 
 	/** Message to protect the pack data from garbage collection. */
 	private String lockMessage;
 
 	/** Git object size limit */
 	private long maxObjectSizeLimit;
 
 	private final ReceivedPackStatistics.Builder stats =
 			new ReceivedPackStatistics.Builder();
 
 	/**
 	 * Initialize a pack parser.
 	 *
 	 * @param odb
 	 *            database the parser will write its objects into.
 	 * @param src
 	 *            the stream the parser will read.
 	 */
 	protected PackParser(ObjectDatabase odb, InputStream src) {
 		objectDatabase = odb.newCachedDatabase();
 		in = src;
 
 		inflater = new InflaterStream();
 		readCurs = objectDatabase.newReader();
 		buf = new byte[BUFFER_SIZE];
 		tempBuffer = new byte[BUFFER_SIZE];
 		hdrBuf = new byte[64];
 		tempObjectId = new MutableObjectId();
 		packDigest = Constants.newMessageDigest();
 		checkObjectCollisions = true;
 	}
 
 	/**
 	 * Whether a thin pack (missing base objects) is permitted.
 	 *
 	 * @return {@code true} if a thin pack (missing base objects) is permitted.
 	 */
 	public boolean isAllowThin() {
 		return allowThin;
 	}
 
 	/**
 	 * Configure this index pack instance to allow a thin pack.
 	 * <p>
 	 * Thin packs are sometimes used during network transfers to allow a delta
 	 * to be sent without a base object. Such packs are not permitted on disk.
 	 *
 	 * @param allow
 	 *            true to enable a thin pack.
 	 */
 	public void setAllowThin(boolean allow) {
 		allowThin = allow;
 	}
 
 	/**
 	 * Whether received objects are verified to prevent collisions.
 	 *
 	 * @return if true received objects are verified to prevent collisions.
 	 * @since 4.1
 	 */
 	protected boolean isCheckObjectCollisions() {
 		return checkObjectCollisions;
 	}
 
 	/**
 	 * Enable checking for collisions with existing objects.
 	 * <p>
 	 * By default PackParser looks for each received object in the repository.
 	 * If the object already exists, the existing object is compared
 	 * byte-for-byte with the newly received copy to ensure they are identical.
 	 * The receive is aborted with an exception if any byte differs. This check
 	 * is necessary to prevent an evil attacker from supplying a replacement
 	 * object into this repository in the event that a discovery enabling SHA-1
 	 * collisions is made.
 	 * <p>
 	 * This check may be very costly to perform, and some repositories may have
 	 * other ways to segregate newly received object data. The check is enabled
 	 * by default, but can be explicitly disabled if the implementation can
 	 * provide the same guarantee, or is willing to accept the risks associated
 	 * with bypassing the check.
 	 *
 	 * @param check
 	 *            true to enable collision checking (strongly encouraged).
 	 * @since 4.1
 	 */
 	protected void setCheckObjectCollisions(boolean check) {
 		checkObjectCollisions = check;
 	}
 
 	/**
 	 * Configure this index pack instance to keep track of new objects.
 	 * <p>
 	 * By default an index pack doesn't save the new objects that were created
 	 * when it was instantiated. Setting this flag to {@code true} allows the
 	 * caller to use {@link #getNewObjectIds()} to retrieve that list.
 	 *
 	 * @param b
 	 *            {@code true} to enable keeping track of new objects.
 	 */
 	public void setNeedNewObjectIds(boolean b) {
 		if (b)
 			newObjectIds = new ObjectIdSubclassMap<>();
 		else
 			newObjectIds = null;
 	}
 
 	private boolean needNewObjectIds() {
 		return newObjectIds != null;
 	}
 
 	/**
 	 * Configure this index pack instance to keep track of the objects assumed
 	 * for delta bases.
 	 * <p>
 	 * By default an index pack doesn't save the objects that were used as delta
 	 * bases. Setting this flag to {@code true} will allow the caller to use
 	 * {@link #getBaseObjectIds()} to retrieve that list.
 	 *
 	 * @param b
 	 *            {@code true} to enable keeping track of delta bases.
 	 */
 	public void setNeedBaseObjectIds(boolean b) {
 		this.needBaseObjectIds = b;
 	}
 
 	/**
 	 * Whether the EOF should be read from the input after the footer.
 	 *
 	 * @return true if the EOF should be read from the input after the footer.
 	 */
 	public boolean isCheckEofAfterPackFooter() {
 		return checkEofAfterPackFooter;
 	}
 
 	/**
 	 * Ensure EOF is read from the input stream after the footer.
 	 *
 	 * @param b
 	 *            true if the EOF should be read; false if it is not checked.
 	 */
 	public void setCheckEofAfterPackFooter(boolean b) {
 		checkEofAfterPackFooter = b;
 	}
 
 	/**
 	 * Whether there is data expected after the pack footer.
 	 *
 	 * @return true if there is data expected after the pack footer.
 	 */
 	public boolean isExpectDataAfterPackFooter() {
 		return expectDataAfterPackFooter;
 	}
 
 	/**
 	 * Set if there is additional data in InputStream after pack.
 	 *
 	 * @param e
 	 *            true if there is additional data in InputStream after pack.
 	 *            This requires the InputStream to support the mark and reset
 	 *            functions.
 	 */
 	public void setExpectDataAfterPackFooter(boolean e) {
 		expectDataAfterPackFooter = e;
 	}
 
 	/**
 	 * Get the new objects that were sent by the user
 	 *
 	 * @return the new objects that were sent by the user
 	 */
 	public ObjectIdSubclassMap<ObjectId> getNewObjectIds() {
 		if (newObjectIds != null)
 			return newObjectIds;
 		return new ObjectIdSubclassMap<>();
 	}
 
 	/**
 	 * Get set of objects the incoming pack assumed for delta purposes
 	 *
 	 * @return set of objects the incoming pack assumed for delta purposes
 	 */
 	public ObjectIdSubclassMap<ObjectId> getBaseObjectIds() {
 		if (baseObjectIds != null)
 			return baseObjectIds;
 		return new ObjectIdSubclassMap<>();
 	}
 
 	/**
 	 * Configure the checker used to validate received objects.
 	 * <p>
 	 * Usually object checking isn't necessary, as Git implementations only
 	 * create valid objects in pack files. However, additional checking may be
 	 * useful if processing data from an untrusted source.
 	 *
 	 * @param oc
 	 *            the checker instance; null to disable object checking.
 	 */
 	public void setObjectChecker(ObjectChecker oc) {
 		objCheck = oc;
 	}
 
 	/**
 	 * Configure the checker used to validate received objects.
 	 * <p>
 	 * Usually object checking isn't necessary, as Git implementations only
 	 * create valid objects in pack files. However, additional checking may be
 	 * useful if processing data from an untrusted source.
 	 * <p>
 	 * This is shorthand for:
 	 *
 	 * <pre>
 	 * setObjectChecker(on ? new ObjectChecker() : null);
 	 * </pre>
 	 *
 	 * @param on
 	 *            true to enable the default checker; false to disable it.
 	 */
 	public void setObjectChecking(boolean on) {
 		setObjectChecker(on ? new ObjectChecker() : null);
 	}
 
 	/**
 	 * Get the message to record with the pack lock.
 	 *
 	 * @return the message to record with the pack lock.
 	 */
 	public String getLockMessage() {
 		return lockMessage;
 	}
 
 	/**
 	 * Set the lock message for the incoming pack data.
 	 *
 	 * @param msg
 	 *            if not null, the message to associate with the incoming data
 	 *            while it is locked to prevent garbage collection.
 	 */
 	public void setLockMessage(String msg) {
 		lockMessage = msg;
 	}
 
 	/**
 	 * Set the maximum allowed Git object size.
 	 * <p>
 	 * If an object is larger than the given size the pack-parsing will throw an
 	 * exception aborting the parsing.
 	 *
 	 * @param limit
 	 *            the Git object size limit. If zero then there is not limit.
 	 */
 	public void setMaxObjectSizeLimit(long limit) {
 		maxObjectSizeLimit = limit;
 	}
 
 	/**
 	 * Get the number of objects in the stream.
 	 * <p>
 	 * The object count is only available after {@link #parse(ProgressMonitor)}
 	 * has returned. The count may have been increased if the stream was a thin
 	 * pack, and missing bases objects were appending onto it by the subclass.
 	 *
 	 * @return number of objects parsed out of the stream.
 	 */
 	public int getObjectCount() {
 		return entryCount;
 	}
 
 	/**
 	 * Get the information about the requested object.
 	 * <p>
 	 * The object information is only available after
 	 * {@link #parse(ProgressMonitor)} has returned.
 	 *
 	 * @param nth
 	 *            index of the object in the stream. Must be between 0 and
 	 *            {@link #getObjectCount()}-1.
 	 * @return the object information.
 	 */
 	public PackedObjectInfo getObject(int nth) {
 		return entries[nth];
 	}
 
 	/**
 	 * Get all of the objects, sorted by their name.
 	 * <p>
 	 * The object information is only available after
 	 * {@link #parse(ProgressMonitor)} has returned.
 	 * <p>
 	 * To maintain lower memory usage and good runtime performance, this method
 	 * sorts the objects in-place and therefore impacts the ordering presented
 	 * by {@link #getObject(int)}.
 	 *
 	 * @param cmp
 	 *            comparison function, if null objects are stored by ObjectId.
 	 * @return sorted list of objects in this pack stream.
 	 */
 	public List<PackedObjectInfo> getSortedObjectList(
 			Comparator<PackedObjectInfo> cmp) {
 		Arrays.sort(entries, 0, entryCount, cmp);
 		List<PackedObjectInfo> list = Arrays.asList(entries);
 		if (entryCount < entries.length)
 			list = list.subList(0, entryCount);
 		return list;
 	}
 
 	/**
 	 * Get the size of the newly created pack.
 	 * <p>
 	 * This will also include the pack index size if an index was created. This
 	 * method should only be called after pack parsing is finished.
 	 *
 	 * @return the pack size (including the index size) or -1 if the size cannot
 	 *         be determined
 	 * @since 3.3
 	 */
 	public long getPackSize() {
 		return -1;
 	}
 
 	/**
 	 * Returns the statistics of the parsed pack.
 	 * <p>
 	 * This should only be called after pack parsing is finished.
 	 *
 	 * @return {@link org.eclipse.jgit.transport.ReceivedPackStatistics}
 	 * @since 4.6
 	 */
 	public ReceivedPackStatistics getReceivedPackStatistics() {
 		return stats.build();
 	}
 
 	/**
 	 * Parse the pack stream.
 	 *
 	 * @param progress
 	 *            callback to provide progress feedback during parsing. If null,
 	 *            {@link org.eclipse.jgit.lib.NullProgressMonitor} will be used.
 	 * @return the pack lock, if one was requested by setting
 	 *         {@link #setLockMessage(String)}.
 	 * @throws java.io.IOException
 	 *             the stream is malformed, or contains corrupt objects.
 	 * @since 3.0
 	 */
 	public final PackLock parse(ProgressMonitor progress) throws IOException {
 		return parse(progress, progress);
 	}
 
 	/**
 	 * Parse the pack stream.
 	 *
 	 * @param receiving
 	 *            receives progress feedback during the initial receiving
 	 *            objects phase. If null,
 	 *            {@link org.eclipse.jgit.lib.NullProgressMonitor} will be used.
 	 * @param resolving
 	 *            receives progress feedback during the resolving objects phase.
 	 * @return the pack lock, if one was requested by setting
 	 *         {@link #setLockMessage(String)}.
 	 * @throws java.io.IOException
 	 *             the stream is malformed, or contains corrupt objects.
 	 * @since 3.0
 	 */
 	public PackLock parse(ProgressMonitor receiving, ProgressMonitor resolving)
 			throws IOException {
 		if (receiving == null)
 			receiving = NullProgressMonitor.INSTANCE;
 		if (resolving == null)
 			resolving = NullProgressMonitor.INSTANCE;
 
 		if (receiving == resolving)
 			receiving.start(2 /* tasks */);
 		try {
 			readPackHeader();
 
 			entries = new PackedObjectInfo[(int) expectedObjectCount];
 			baseById = new ObjectIdOwnerMap<>();
 			baseByPos = new LongMap<>();
 			collisionCheckObjs = new BlockList<>();
 
 			receiving.beginTask(JGitText.get().receivingObjects,
 					(int) expectedObjectCount);
 			try {
 				for (int done = 0; done < expectedObjectCount; done++) {
 					indexOneObject();
 					receiving.update(1);
 					if (receiving.isCancelled())
 						throw new IOException(JGitText.get().downloadCancelled);
 				}
 				readPackFooter();
 				endInput();
 			} finally {
 				receiving.endTask();
 			}
 
 			if (!collisionCheckObjs.isEmpty()) {
 				checkObjectCollision();
 			}
 
 			if (deltaCount > 0) {
 				processDeltas(resolving);
 			}
 
 			packDigest = null;
 			baseById = null;
 			baseByPos = null;
 		} finally {
 			try {
 				if (readCurs != null)
 					readCurs.close();
 			} finally {
 				readCurs = null;
 			}
 
 			try {
 				inflater.release();
 			} finally {
 				inflater = null;
 			}
 		}
 		return null; // By default there is no locking.
 	}
 
 	private void processDeltas(ProgressMonitor resolving) throws IOException {
 		if (resolving instanceof BatchingProgressMonitor) {
 			((BatchingProgressMonitor) resolving).setDelayStart(1000,
 					TimeUnit.MILLISECONDS);
 		}
 		resolving.beginTask(JGitText.get().resolvingDeltas, deltaCount);
 		resolveDeltas(resolving);
 		if (entryCount < expectedObjectCount) {
 			if (!isAllowThin()) {
 				throw new IOException(MessageFormat.format(
 						JGitText.get().packHasUnresolvedDeltas,
 						Long.valueOf(expectedObjectCount - entryCount)));
 			}
 
 			resolveDeltasWithExternalBases(resolving);
 
 			if (entryCount < expectedObjectCount) {
 				throw new IOException(MessageFormat.format(
 						JGitText.get().packHasUnresolvedDeltas,
 						Long.valueOf(expectedObjectCount - entryCount)));
 			}
 		}
 		resolving.endTask();
 	}
 
 	private void resolveDeltas(ProgressMonitor progress)
 			throws IOException {
 		final int last = entryCount;
 		for (int i = 0; i < last; i++) {
 			resolveDeltas(entries[i], progress);
 			if (progress.isCancelled())
 				throw new IOException(
 						JGitText.get().downloadCancelledDuringIndexing);
 		}
 	}
 
 	private void resolveDeltas(final PackedObjectInfo oe,
 			ProgressMonitor progress) throws IOException {
 		UnresolvedDelta children = firstChildOf(oe);
 		if (children == null)
 			return;
 
 		DeltaVisit visit = new DeltaVisit();
 		visit.nextChild = children;
 
 		ObjectTypeAndSize info = openDatabase(oe, new ObjectTypeAndSize());
 		switch (info.type) {
 		case Constants.OBJ_COMMIT:
 		case Constants.OBJ_TREE:
 		case Constants.OBJ_BLOB:
 		case Constants.OBJ_TAG:
 			visit.data = inflateAndReturn(Source.DATABASE, info.size);
 			visit.id = oe;
 			break;
 		default:
 			throw new IOException(MessageFormat.format(
 					JGitText.get().unknownObjectType,
 					Integer.valueOf(info.type)));
 		}
 
 		if (!checkCRC(oe.getCRC())) {
 			throw new IOException(MessageFormat.format(
 					JGitText.get().corruptionDetectedReReadingAt,
 					Long.valueOf(oe.getOffset())));
 		}
 
 		resolveDeltas(visit.next(), info.type, info, progress);
 	}
 
 	private void resolveDeltas(DeltaVisit visit, final int type,
 			ObjectTypeAndSize info, ProgressMonitor progress)
 			throws IOException {
 		stats.addDeltaObject(type);
 		do {
 			progress.update(1);
 			info = openDatabase(visit.delta, info);
 			switch (info.type) {
 			case Constants.OBJ_OFS_DELTA:
 			case Constants.OBJ_REF_DELTA:
 				break;
 
 			default:
 				throw new IOException(MessageFormat.format(
 						JGitText.get().unknownObjectType,
 						Integer.valueOf(info.type)));
 			}
 
 			byte[] delta = inflateAndReturn(Source.DATABASE, info.size);
 			checkIfTooLarge(type, BinaryDelta.getResultSize(delta));
 
 			visit.data = BinaryDelta.apply(visit.parent.data, delta);
 			delta = null;
 
 			if (!checkCRC(visit.delta.crc))
 				throw new IOException(MessageFormat.format(
 						JGitText.get().corruptionDetectedReReadingAt,
 						Long.valueOf(visit.delta.position)));
 
 			SHA1 objectDigest = objectHasher.reset();
 			objectDigest.update(Constants.encodedTypeString(type));
 			objectDigest.update((byte) ' ');
 			objectDigest.update(Constants.encodeASCII(visit.data.length));
 			objectDigest.update((byte) 0);
 			objectDigest.update(visit.data);
 			objectDigest.digest(tempObjectId);
 
 			verifySafeObject(tempObjectId, type, visit.data);
 			if (isCheckObjectCollisions() && readCurs.has(tempObjectId)) {
 				checkObjectCollision(tempObjectId, type, visit.data);
 			}
 
 			PackedObjectInfo oe;
 			oe = newInfo(tempObjectId, visit.delta, visit.parent.id);
 			oe.setOffset(visit.delta.position);
 			oe.setType(type);
 			onInflatedObjectData(oe, type, visit.data);
 			addObjectAndTrack(oe);
 			visit.id = oe;
 
 			visit.nextChild = firstChildOf(oe);
 			visit = visit.next();
 		} while (visit != null);
 	}
 
 	private final void checkIfTooLarge(int typeCode, long size)
 			throws IOException {
 		if (0 < maxObjectSizeLimit && maxObjectSizeLimit < size) {
 			switch (typeCode) {
 			case Constants.OBJ_COMMIT:
 			case Constants.OBJ_TREE:
 			case Constants.OBJ_BLOB:
 			case Constants.OBJ_TAG:
 				throw new TooLargeObjectInPackException(size, maxObjectSizeLimit);
 
 			case Constants.OBJ_OFS_DELTA:
 			case Constants.OBJ_REF_DELTA:
 				throw new TooLargeObjectInPackException(size, maxObjectSizeLimit);
 
 			default:
 				throw new IOException(MessageFormat.format(
 						JGitText.get().unknownObjectType,
 						Integer.valueOf(typeCode)));
 			}
 		}
 		if (size > Integer.MAX_VALUE - 8) {
 			throw new TooLargeObjectInPackException(size, Integer.MAX_VALUE - 8);
 		}
 	}
 
 	/**
 	 * Read the header of the current object.
 	 * <p>
 	 * After the header has been parsed, this method automatically invokes
 	 * {@link #onObjectHeader(Source, byte[], int, int)} to allow the
 	 * implementation to update its internal checksums for the bytes read.
 	 * <p>
 	 * When this method returns the database will be positioned on the first
 	 * byte of the deflated data stream.
 	 *
 	 * @param info
 	 *            the info object to populate.
 	 * @return {@code info}, after populating.
 	 * @throws java.io.IOException
 	 *             the size cannot be read.
 	 */
 	protected ObjectTypeAndSize readObjectHeader(ObjectTypeAndSize info)
 			throws IOException {
 		int hdrPtr = 0;
 		int c = readFrom(Source.DATABASE);
 		hdrBuf[hdrPtr++] = (byte) c;
 
 		info.type = (c >> 4) & 7;
 		long sz = c & 15;
 		int shift = 4;
 		while ((c & 0x80) != 0) {
 			c = readFrom(Source.DATABASE);
 			hdrBuf[hdrPtr++] = (byte) c;
 			sz += ((long) (c & 0x7f)) << shift;
 			shift += 7;
 		}
 		info.size = sz;
 
 		switch (info.type) {
 		case Constants.OBJ_COMMIT:
 		case Constants.OBJ_TREE:
 		case Constants.OBJ_BLOB:
 		case Constants.OBJ_TAG:
 			onObjectHeader(Source.DATABASE, hdrBuf, 0, hdrPtr);
 			break;
 
 		case Constants.OBJ_OFS_DELTA:
 			c = readFrom(Source.DATABASE);
 			hdrBuf[hdrPtr++] = (byte) c;
 			while ((c & 128) != 0) {
 				c = readFrom(Source.DATABASE);
 				hdrBuf[hdrPtr++] = (byte) c;
 			}
 			onObjectHeader(Source.DATABASE, hdrBuf, 0, hdrPtr);
 			break;
 
 		case Constants.OBJ_REF_DELTA:
 			System.arraycopy(buf, fill(Source.DATABASE, 20), hdrBuf, hdrPtr, 20);
 			hdrPtr += 20;
 			use(20);
 			onObjectHeader(Source.DATABASE, hdrBuf, 0, hdrPtr);
 			break;
 
 		default:
 			throw new IOException(MessageFormat.format(
 					JGitText.get().unknownObjectType,
 					Integer.valueOf(info.type)));
 		}
 		return info;
 	}
 
 	private UnresolvedDelta removeBaseById(AnyObjectId id) {
 		final DeltaChain d = baseById.get(id);
 		return d != null ? d.remove() : null;
 	}
 
 	private static UnresolvedDelta reverse(UnresolvedDelta c) {
 		UnresolvedDelta tail = null;
 		while (c != null) {
 			final UnresolvedDelta n = c.next;
 			c.next = tail;
 			tail = c;
 			c = n;
 		}
 		return tail;
 	}
 
 	private UnresolvedDelta firstChildOf(PackedObjectInfo oe) {
 		UnresolvedDelta a = reverse(removeBaseById(oe));
 		UnresolvedDelta b = reverse(baseByPos.remove(oe.getOffset()));
 
 		if (a == null)
 			return b;
 		if (b == null)
 			return a;
 
 		UnresolvedDelta first = null;
 		UnresolvedDelta last = null;
 		while (a != null || b != null) {
 			UnresolvedDelta curr;
 			if (b == null || (a != null && a.position < b.position)) {
 				curr = a;
 				a = a.next;
 			} else {
 				curr = b;
 				b = b.next;
 			}
 			if (last != null)
 				last.next = curr;
 			else
 				first = curr;
 			last = curr;
 			curr.next = null;
 		}
 		return first;
 	}
 
 	private void resolveDeltasWithExternalBases(ProgressMonitor progress)
 			throws IOException {
 		growEntries(baseById.size());
 
 		if (needBaseObjectIds)
 			baseObjectIds = new ObjectIdSubclassMap<>();
 
 		final List<DeltaChain> missing = new ArrayList<>(64);
 		for (DeltaChain baseId : baseById) {
 			if (baseId.head == null)
 				continue;
 
 			if (needBaseObjectIds)
 				baseObjectIds.add(baseId);
 
 			final ObjectLoader ldr;
 			try {
 				ldr = readCurs.open(baseId);
 			} catch (MissingObjectException notFound) {
 				missing.add(baseId);
 				continue;
 			}
 
 			final DeltaVisit visit = new DeltaVisit();
 			visit.data = ldr.getCachedBytes(Integer.MAX_VALUE);
 			visit.id = baseId;
 			final int typeCode = ldr.getType();
 			final PackedObjectInfo oe = newInfo(baseId, null, null);
 			oe.setType(typeCode);
 			if (onAppendBase(typeCode, visit.data, oe))
 				entries[entryCount++] = oe;
 			visit.nextChild = firstChildOf(oe);
 			resolveDeltas(visit.next(), typeCode,
 					new ObjectTypeAndSize(), progress);
 
 			if (progress.isCancelled())
 				throw new IOException(
 						JGitText.get().downloadCancelledDuringIndexing);
 		}
 
 		for (DeltaChain base : missing) {
 			if (base.head != null)
 				throw new MissingObjectException(base, "delta base"); //$NON-NLS-1$
 		}
 
 		onEndThinPack();
 	}
 
 	private void growEntries(int extraObjects) {
 		final PackedObjectInfo[] ne;
 
 		ne = new PackedObjectInfo[(int) expectedObjectCount + extraObjects];
 		System.arraycopy(entries, 0, ne, 0, entryCount);
 		entries = ne;
 	}
 
 	private void readPackHeader() throws IOException {
 		if (expectDataAfterPackFooter) {
 			if (!in.markSupported())
 				throw new IOException(
 						JGitText.get().inputStreamMustSupportMark);
 			in.mark(buf.length);
 		}
 
 		final int hdrln = Constants.PACK_SIGNATURE.length + 4 + 4;
 		final int p = fill(Source.INPUT, hdrln);
 		for (int k = 0; k < Constants.PACK_SIGNATURE.length; k++)
 			if (buf[p + k] != Constants.PACK_SIGNATURE[k])
 				throw new IOException(JGitText.get().notAPACKFile);
 
 		final long vers = NB.decodeUInt32(buf, p + 4);
 		if (vers != 2 && vers != 3)
 			throw new IOException(MessageFormat.format(
 					JGitText.get().unsupportedPackVersion, Long.valueOf(vers)));
 		final long objectCount = NB.decodeUInt32(buf, p + 8);
 		use(hdrln);
 		setExpectedObjectCount(objectCount);
 		onPackHeader(objectCount);
 	}
 
 	private void readPackFooter() throws IOException {
 		sync();
 		final byte[] actHash = packDigest.digest();
 
 		final int c = fill(Source.INPUT, 20);
 		final byte[] srcHash = new byte[20];
 		System.arraycopy(buf, c, srcHash, 0, 20);
 		use(20);
 
 		if (bAvail != 0 && !expectDataAfterPackFooter)
 			throw new CorruptObjectException(MessageFormat.format(
 					JGitText.get().expectedEOFReceived,
 					"\\x" + Integer.toHexString(buf[bOffset] & 0xff))); //$NON-NLS-1$
 		if (isCheckEofAfterPackFooter()) {
 			int eof = in.read();
 			if (0 <= eof)
 				throw new CorruptObjectException(MessageFormat.format(
 						JGitText.get().expectedEOFReceived,
 						"\\x" + Integer.toHexString(eof))); //$NON-NLS-1$
 		} else if (bAvail > 0 && expectDataAfterPackFooter) {
 			in.reset();
 			IO.skipFully(in, bOffset);
 		}
 
 		if (!Arrays.equals(actHash, srcHash))
 			throw new CorruptObjectException(
 					JGitText.get().corruptObjectPackfileChecksumIncorrect);
 
 		onPackFooter(srcHash);
 	}
 
 	// Cleanup all resources associated with our input parsing.
 	private void endInput() {
 		stats.setNumBytesRead(streamPosition());
 		in = null;
 	}
 
 	// Read one entire object or delta from the input.
 	private void indexOneObject() throws IOException {
 		final long streamPosition = streamPosition();
 
 		int hdrPtr = 0;
 		int c = readFrom(Source.INPUT);
 		hdrBuf[hdrPtr++] = (byte) c;
 
 		final int typeCode = (c >> 4) & 7;
 		long sz = c & 15;
 		int shift = 4;
 		while ((c & 0x80) != 0) {
 			c = readFrom(Source.INPUT);
 			hdrBuf[hdrPtr++] = (byte) c;
 			sz += ((long) (c & 0x7f)) << shift;
 			shift += 7;
 		}
 
 		checkIfTooLarge(typeCode, sz);
 
 		switch (typeCode) {
 		case Constants.OBJ_COMMIT:
 		case Constants.OBJ_TREE:
 		case Constants.OBJ_BLOB:
 		case Constants.OBJ_TAG:
 			stats.addWholeObject(typeCode);
 			onBeginWholeObject(streamPosition, typeCode, sz);
 			onObjectHeader(Source.INPUT, hdrBuf, 0, hdrPtr);
 			whole(streamPosition, typeCode, sz);
 			break;
 
 		case Constants.OBJ_OFS_DELTA: {
 			stats.addOffsetDelta();
 			c = readFrom(Source.INPUT);
 			hdrBuf[hdrPtr++] = (byte) c;
 			long ofs = c & 127;
 			while ((c & 128) != 0) {
 				ofs += 1;
 				c = readFrom(Source.INPUT);
 				hdrBuf[hdrPtr++] = (byte) c;
 				ofs <<= 7;
 				ofs += (c & 127);
 			}
 			final long base = streamPosition - ofs;
 			onBeginOfsDelta(streamPosition, base, sz);
 			onObjectHeader(Source.INPUT, hdrBuf, 0, hdrPtr);
 			inflateAndSkip(Source.INPUT, sz);
 			UnresolvedDelta n = onEndDelta();
 			n.position = streamPosition;
 			n.next = baseByPos.put(base, n);
 			deltaCount++;
 			break;
 		}
 
 		case Constants.OBJ_REF_DELTA: {
 			stats.addRefDelta();
 			c = fill(Source.INPUT, 20);
 			final ObjectId base = ObjectId.fromRaw(buf, c);
 			System.arraycopy(buf, c, hdrBuf, hdrPtr, 20);
 			hdrPtr += 20;
 			use(20);
 			DeltaChain r = baseById.get(base);
 			if (r == null) {
 				r = new DeltaChain(base);
 				baseById.add(r);
 			}
 			onBeginRefDelta(streamPosition, base, sz);
 			onObjectHeader(Source.INPUT, hdrBuf, 0, hdrPtr);
 			inflateAndSkip(Source.INPUT, sz);
 			UnresolvedDelta n = onEndDelta();
 			n.position = streamPosition;
 			r.add(n);
 			deltaCount++;
 			break;
 		}
 
 		default:
 			throw new IOException(
 					MessageFormat.format(JGitText.get().unknownObjectType,
 							Integer.valueOf(typeCode)));
 		}
 	}
 
 	private void whole(long pos, int type, long sz)
 			throws IOException {
 		SHA1 objectDigest = objectHasher.reset();
 		objectDigest.update(Constants.encodedTypeString(type));
 		objectDigest.update((byte) ' ');
 		objectDigest.update(Constants.encodeASCII(sz));
 		objectDigest.update((byte) 0);
 
 		final byte[] data;
 		if (type == Constants.OBJ_BLOB) {
 			byte[] readBuffer = buffer();
 			BlobObjectChecker checker = null;
 			if (objCheck != null) {
 				checker = objCheck.newBlobObjectChecker();
 			}
 			if (checker == null) {
 				checker = BlobObjectChecker.NULL_CHECKER;
 			}
 			long cnt = 0;
 			try (InputStream inf = inflate(Source.INPUT, sz)) {
 				while (cnt < sz) {
 					int r = inf.read(readBuffer);
 					if (r <= 0)
 						break;
 					objectDigest.update(readBuffer, 0, r);
 					checker.update(readBuffer, 0, r);
 					cnt += r;
 				}
 			}
 			objectDigest.digest(tempObjectId);
 			checker.endBlob(tempObjectId);
 			data = null;
 		} else {
 			data = inflateAndReturn(Source.INPUT, sz);
 			objectDigest.update(data);
 			objectDigest.digest(tempObjectId);
 			verifySafeObject(tempObjectId, type, data);
 		}
 
 		PackedObjectInfo obj = newInfo(tempObjectId, null, null);
 		obj.setOffset(pos);
 		obj.setType(type);
 		onEndWholeObject(obj);
 		if (data != null)
 			onInflatedObjectData(obj, type, data);
 		addObjectAndTrack(obj);
 
 		if (isCheckObjectCollisions()) {
 			collisionCheckObjs.add(obj);
 		}
 	}
 
 	/**
 	 * Verify the integrity of the object.
 	 *
 	 * @param id
 	 *            identity of the object to be checked.
 	 * @param type
 	 *            the type of the object.
 	 * @param data
 	 *            raw content of the object.
 	 * @throws org.eclipse.jgit.errors.CorruptObjectException
 	 * @since 4.9
 	 */
 	protected void verifySafeObject(final AnyObjectId id, final int type,
 			final byte[] data) throws CorruptObjectException {
 		if (objCheck != null) {
 			try {
 				objCheck.check(id, type, data);
 			} catch (CorruptObjectException e) {
 				if (e.getErrorType() != null) {
 					throw e;
 				}
 				throw new CorruptObjectException(
 						MessageFormat.format(JGitText.get().invalidObject,
 								Constants.typeString(type), id.name(),
 								e.getMessage()),
 						e);
 			}
 		}
 	}
 
 	private void checkObjectCollision() throws IOException {
 		for (PackedObjectInfo obj : collisionCheckObjs) {
 			if (!readCurs.has(obj)) {
 				continue;
 			}
 			checkObjectCollision(obj);
 		}
 	}
 
 	private void checkObjectCollision(PackedObjectInfo obj)
 			throws IOException {
 		ObjectTypeAndSize info = openDatabase(obj, new ObjectTypeAndSize());
 		final byte[] readBuffer = buffer();
 		final byte[] curBuffer = new byte[readBuffer.length];
 		long sz = info.size;
 		try (ObjectStream cur = readCurs.open(obj, info.type).openStream()) {
 			if (cur.getSize() != sz) {
 				throw new IOException(MessageFormat.format(
 						JGitText.get().collisionOn, obj.name()));
 			}
 			try (InputStream pck = inflate(Source.DATABASE, sz)) {
 				while (0 < sz) {
 					int n = (int) Math.min(readBuffer.length, sz);
 					IO.readFully(cur, curBuffer, 0, n);
 					IO.readFully(pck, readBuffer, 0, n);
 					for (int i = 0; i < n; i++) {
 						if (curBuffer[i] != readBuffer[i]) {
 							throw new IOException(MessageFormat.format(
 									JGitText.get().collisionOn, obj.name()));
 						}
 					}
 					sz -= n;
 				}
 			}
 		} catch (MissingObjectException notLocal) {
 			// This is OK, we don't have a copy of the object locally
 			// but the API throws when we try to read it as usually it's
 			// an error to read something that doesn't exist.
 		}
 	}
 
 	private void checkObjectCollision(AnyObjectId obj, int type, byte[] data)
 			throws IOException {
 		try {
 			final ObjectLoader ldr = readCurs.open(obj, type);
 			final byte[] existingData = ldr.getCachedBytes(data.length);
 			if (!Arrays.equals(data, existingData)) {
 				throw new IOException(MessageFormat.format(
 						JGitText.get().collisionOn, obj.name()));
 			}
 		} catch (MissingObjectException notLocal) {
 			// This is OK, we don't have a copy of the object locally
 			// but the API throws when we try to read it as usually its
 			// an error to read something that doesn't exist.
 		}
 	}
 
 	/** @return current position of the input stream being parsed. */
 	private long streamPosition() {
 		return bBase + bOffset;
 	}
 
 	private ObjectTypeAndSize openDatabase(PackedObjectInfo obj,
 			ObjectTypeAndSize info) throws IOException {
 		bOffset = 0;
 		bAvail = 0;
 		return seekDatabase(obj, info);
 	}
 
 	private ObjectTypeAndSize openDatabase(UnresolvedDelta delta,
 			ObjectTypeAndSize info) throws IOException {
 		bOffset = 0;
 		bAvail = 0;
 		return seekDatabase(delta, info);
 	}
 
 	// Consume exactly one byte from the buffer and return it.
 	private int readFrom(Source src) throws IOException {
 		if (bAvail == 0)
 			fill(src, 1);
 		bAvail--;
 		return buf[bOffset++] & 0xff;
 	}
 
 	// Consume cnt bytes from the buffer.
 	void use(int cnt) {
 		bOffset += cnt;
 		bAvail -= cnt;
 	}
 
 	// Ensure at least need bytes are available in in {@link #buf}.
 	int fill(Source src, int need) throws IOException {
 		while (bAvail < need) {
 			int next = bOffset + bAvail;
 			int free = buf.length - next;
 			if (free + bAvail < need) {
 				switch (src) {
 				case INPUT:
 					sync();
 					break;
 				case DATABASE:
 					if (bAvail > 0)
 						System.arraycopy(buf, bOffset, buf, 0, bAvail);
 					bOffset = 0;
 					break;
 				}
 				next = bAvail;
 				free = buf.length - next;
 			}
 			switch (src) {
 			case INPUT:
 				next = in.read(buf, next, free);
 				break;
 			case DATABASE:
 				next = readDatabase(buf, next, free);
 				break;
 			}
 			if (next <= 0)
 				throw new EOFException(
 						JGitText.get().packfileIsTruncatedNoParam);
 			bAvail += next;
 		}
 		return bOffset;
 	}
 
 	// Store consumed bytes in {@link #buf} up to {@link #bOffset}.
 	private void sync() throws IOException {
 		packDigest.update(buf, 0, bOffset);
 		onStoreStream(buf, 0, bOffset);
 		if (expectDataAfterPackFooter) {
 			if (bAvail > 0) {
 				in.reset();
 				IO.skipFully(in, bOffset);
 				bAvail = 0;
 			}
 			in.mark(buf.length);
 		} else if (bAvail > 0)
 			System.arraycopy(buf, bOffset, buf, 0, bAvail);
 		bBase += bOffset;
 		bOffset = 0;
 	}
 
 	/**
 	 * Get a temporary byte array for use by the caller.
 	 *
 	 * @return a temporary byte array for use by the caller.
 	 */
 	protected byte[] buffer() {
 		return tempBuffer;
 	}
 
 	/**
 	 * Construct a PackedObjectInfo instance for this parser.
 	 *
 	 * @param id
 	 *            identity of the object to be tracked.
 	 * @param delta
 	 *            if the object was previously an unresolved delta, this is the
 	 *            delta object that was tracking it. Otherwise null.
 	 * @param deltaBase
 	 *            if the object was previously an unresolved delta, this is the
 	 *            ObjectId of the base of the delta. The base may be outside of
 	 *            the pack stream if the stream was a thin-pack.
 	 * @return info object containing this object's data.
 	 */
 	protected PackedObjectInfo newInfo(AnyObjectId id, UnresolvedDelta delta,
 			ObjectId deltaBase) {
 		PackedObjectInfo oe = new PackedObjectInfo(id);
 		if (delta != null)
 			oe.setCRC(delta.crc);
 		return oe;
 	}
 
 	/**
 	 * Set the expected number of objects in the pack stream.
 	 * <p>
 	 * The object count in the pack header is not always correct for some Dfs
 	 * pack files. e.g. INSERT pack always assume 1 object in the header since
 	 * the actual object count is unknown when the pack is written.
 	 * <p>
 	 * If external implementation wants to overwrite the expectedObjectCount,
 	 * they should call this method during {@link #onPackHeader(long)}.
 	 *
 	 * @param expectedObjectCount a long.
 	 * @since 4.9
 	 */
 	protected void setExpectedObjectCount(long expectedObjectCount) {
 		this.expectedObjectCount = expectedObjectCount;
 	}
 
 	/**
 	 * Store bytes received from the raw stream.
 	 * <p>
 	 * This method is invoked during {@link #parse(ProgressMonitor)} as data is
 	 * consumed from the incoming stream. Implementors may use this event to
 	 * archive the raw incoming stream to the destination repository in large
 	 * chunks, without paying attention to object boundaries.
 	 * <p>
 	 * The only component of the pack not supplied to this method is the last 20
 	 * bytes of the pack that comprise the trailing SHA-1 checksum. Those are
 	 * passed to {@link #onPackFooter(byte[])}.
 	 *
 	 * @param raw
 	 *            buffer to copy data out of.
 	 * @param pos
 	 *            first offset within the buffer that is valid.
 	 * @param len
 	 *            number of bytes in the buffer that are valid.
 	 * @throws java.io.IOException
 	 *             the stream cannot be archived.
 	 */
 	protected abstract void onStoreStream(byte[] raw, int pos, int len)
 			throws IOException;
 
 	/**
 	 * Store (and/or checksum) an object header.
 	 * <p>
 	 * Invoked after any of the {@code onBegin()} events. The entire header is
 	 * supplied in a single invocation, before any object data is supplied.
 	 *
 	 * @param src
 	 *            where the data came from
 	 * @param raw
 	 *            buffer to read data from.
 	 * @param pos
 	 *            first offset within buffer that is valid.
 	 * @param len
 	 *            number of bytes in buffer that are valid.
 	 * @throws java.io.IOException
 	 *             the stream cannot be archived.
 	 */
 	protected abstract void onObjectHeader(Source src, byte[] raw, int pos,
 			int len) throws IOException;
 
 	/**
 	 * Store (and/or checksum) a portion of an object's data.
 	 * <p>
 	 * This method may be invoked multiple times per object, depending on the
 	 * size of the object, the size of the parser's internal read buffer, and
 	 * the alignment of the object relative to the read buffer.
 	 * <p>
 	 * Invoked after {@link #onObjectHeader(Source, byte[], int, int)}.
 	 *
 	 * @param src
 	 *            where the data came from
 	 * @param raw
 	 *            buffer to read data from.
 	 * @param pos
 	 *            first offset within buffer that is valid.
 	 * @param len
 	 *            number of bytes in buffer that are valid.
 	 * @throws java.io.IOException
 	 *             the stream cannot be archived.
 	 */
 	protected abstract void onObjectData(Source src, byte[] raw, int pos,
 			int len) throws IOException;
 
 	/**
 	 * Invoked for commits, trees, tags, and small blobs.
 	 *
 	 * @param obj
 	 *            the object info, populated.
 	 * @param typeCode
 	 *            the type of the object.
 	 * @param data
 	 *            inflated data for the object.
 	 * @throws java.io.IOException
 	 *             the object cannot be archived.
 	 */
 	protected abstract void onInflatedObjectData(PackedObjectInfo obj,
 			int typeCode, byte[] data) throws IOException;
 
 	/**
 	 * Provide the implementation with the original stream's pack header.
 	 *
 	 * @param objCnt
 	 *            number of objects expected in the stream.
 	 * @throws java.io.IOException
 	 *             the implementation refuses to work with this many objects.
 	 */
 	protected abstract void onPackHeader(long objCnt) throws IOException;
 
 	/**
 	 * Provide the implementation with the original stream's pack footer.
 	 *
 	 * @param hash
 	 *            the trailing 20 bytes of the pack, this is a SHA-1 checksum of
 	 *            all of the pack data.
 	 * @throws java.io.IOException
 	 *             the stream cannot be archived.
 	 */
 	protected abstract void onPackFooter(byte[] hash) throws IOException;
 
 	/**
 	 * Provide the implementation with a base that was outside of the pack.
 	 * <p>
 	 * This event only occurs on a thin pack for base objects that were outside
 	 * of the pack and came from the local repository. Usually an implementation
 	 * uses this event to compress the base and append it onto the end of the
 	 * pack, so the pack stays self-contained.
 	 *
 	 * @param typeCode
 	 *            type of the base object.
 	 * @param data
 	 *            complete content of the base object.
 	 * @param info
 	 *            packed object information for this base. Implementors must
 	 *            populate the CRC and offset members if returning true.
 	 * @return true if the {@code info} should be included in the object list
 	 *         returned by {@link #getSortedObjectList(Comparator)}, false if it
 	 *         should not be included.
 	 * @throws java.io.IOException
 	 *             the base could not be included into the pack.
 	 */
 	protected abstract boolean onAppendBase(int typeCode, byte[] data,
 			PackedObjectInfo info) throws IOException;
 
 	/**
 	 * Event indicating a thin pack has been completely processed.
 	 * <p>
 	 * This event is invoked only if a thin pack has delta references to objects
 	 * external from the pack. The event is called after all of those deltas
 	 * have been resolved.
 	 *
 	 * @throws java.io.IOException
 	 *             the pack cannot be archived.
 	 */
 	protected abstract void onEndThinPack() throws IOException;
 
 	/**
 	 * Reposition the database to re-read a previously stored object.
 	 * <p>
 	 * If the database is computing CRC-32 checksums for object data, it should
 	 * reset its internal CRC instance during this method call.
 	 *
 	 * @param obj
 	 *            the object position to begin reading from. This is from
 	 *            {@link #newInfo(AnyObjectId, UnresolvedDelta, ObjectId)}.
 	 * @param info
 	 *            object to populate with type and size.
 	 * @return the {@code info} object.
 	 * @throws java.io.IOException
 	 *             the database cannot reposition to this location.
 	 */
 	protected abstract ObjectTypeAndSize seekDatabase(PackedObjectInfo obj,
 			ObjectTypeAndSize info) throws IOException;
 
 	/**
 	 * Reposition the database to re-read a previously stored object.
 	 * <p>
 	 * If the database is computing CRC-32 checksums for object data, it should
 	 * reset its internal CRC instance during this method call.
 	 *
 	 * @param delta
 	 *            the object position to begin reading from. This is an instance
 	 *            previously returned by {@link #onEndDelta()}.
 	 * @param info
 	 *            object to populate with type and size.
 	 * @return the {@code info} object.
 	 * @throws java.io.IOException
 	 *             the database cannot reposition to this location.
 	 */
 	protected abstract ObjectTypeAndSize seekDatabase(UnresolvedDelta delta,
 			ObjectTypeAndSize info) throws IOException;
 
 	/**
 	 * Read from the database's current position into the buffer.
 	 *
 	 * @param dst
 	 *            the buffer to copy read data into.
 	 * @param pos
 	 *            position within {@code dst} to start copying data into.
 	 * @param cnt
 	 *            ideal target number of bytes to read. Actual read length may
 	 *            be shorter.
 	 * @return number of bytes stored.
 	 * @throws java.io.IOException
 	 *             the database cannot be accessed.
 	 */
 	protected abstract int readDatabase(byte[] dst, int pos, int cnt)
 			throws IOException;
 
 	/**
 	 * Check the current CRC matches the expected value.
 	 * <p>
 	 * This method is invoked when an object is read back in from the database
 	 * and its data is used during delta resolution. The CRC is validated after
 	 * the object has been fully read, allowing the parser to verify there was
 	 * no silent data corruption.
 	 * <p>
 	 * Implementations are free to ignore this check by always returning true if
 	 * they are performing other data integrity validations at a lower level.
 	 *
 	 * @param oldCRC
 	 *            the prior CRC that was recorded during the first scan of the
 	 *            object from the pack stream.
 	 * @return true if the CRC matches; false if it does not.
 	 */
 	protected abstract boolean checkCRC(int oldCRC);
 
 	/**
 	 * Event notifying the start of an object stored whole (not as a delta).
 	 *
 	 * @param streamPosition
 	 *            position of this object in the incoming stream.
 	 * @param type
 	 *            type of the object; one of
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_COMMIT},
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_TREE},
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_BLOB}, or
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_TAG}.
 	 * @param inflatedSize
 	 *            size of the object when fully inflated. The size stored within
 	 *            the pack may be larger or smaller, and is not yet known.
 	 * @throws java.io.IOException
 	 *             the object cannot be recorded.
 	 */
 	protected abstract void onBeginWholeObject(long streamPosition, int type,
 			long inflatedSize) throws IOException;
 
 	/**
 	 * Event notifying the the current object.
 	 *
 	 *@param info
 	 *            object information.
 	 * @throws java.io.IOException
 	 *             the object cannot be recorded.
 	 */
 	protected abstract void onEndWholeObject(PackedObjectInfo info)
 			throws IOException;
 
 	/**
 	 * Event notifying start of a delta referencing its base by offset.
 	 *
 	 * @param deltaStreamPosition
 	 *            position of this object in the incoming stream.
 	 * @param baseStreamPosition
 	 *            position of the base object in the incoming stream. The base
 	 *            must be before the delta, therefore {@code baseStreamPosition
 	 *            &lt; deltaStreamPosition}. This is <b>not</b> the position
 	 *            returned by a prior end object event.
 	 * @param inflatedSize
 	 *            size of the delta when fully inflated. The size stored within
 	 *            the pack may be larger or smaller, and is not yet known.
 	 * @throws java.io.IOException
 	 *             the object cannot be recorded.
 	 */
 	protected abstract void onBeginOfsDelta(long deltaStreamPosition,
 			long baseStreamPosition, long inflatedSize) throws IOException;
 
 	/**
 	 * Event notifying start of a delta referencing its base by ObjectId.
 	 *
 	 * @param deltaStreamPosition
 	 *            position of this object in the incoming stream.
 	 * @param baseId
 	 *            name of the base object. This object may be later in the
 	 *            stream, or might not appear at all in the stream (in the case
 	 *            of a thin-pack).
 	 * @param inflatedSize
 	 *            size of the delta when fully inflated. The size stored within
 	 *            the pack may be larger or smaller, and is not yet known.
 	 * @throws java.io.IOException
 	 *             the object cannot be recorded.
 	 */
 	protected abstract void onBeginRefDelta(long deltaStreamPosition,
 			AnyObjectId baseId, long inflatedSize) throws IOException;
 
 	/**
 	 * Event notifying the the current object.
 	 *
 	 *@return object information that must be populated with at least the
 	 *         offset.
 	 * @throws java.io.IOException
 	 *             the object cannot be recorded.
 	 */
 	protected UnresolvedDelta onEndDelta() throws IOException {
 		return new UnresolvedDelta();
 	}
 
 	/** Type and size information about an object in the database buffer. */
 	public static class ObjectTypeAndSize {
 		/** The type of the object. */
 		public int type;
 
 		/** The inflated size of the object. */
 		public long size;
 	}
 
 	private void inflateAndSkip(Source src, long inflatedSize)
 			throws IOException {
 		try (InputStream inf = inflate(src, inflatedSize)) {
 			IO.skipFully(inf, inflatedSize);
 		}
 	}
 
 	private byte[] inflateAndReturn(Source src, long inflatedSize)
 			throws IOException {
 		final byte[] dst = new byte[(int) inflatedSize];
 		try (InputStream inf = inflate(src, inflatedSize)) {
 			IO.readFully(inf, dst, 0, dst.length);
 		}
 		return dst;
 	}
 
 	private InputStream inflate(Source src, long inflatedSize)
 			throws IOException {
 		inflater.open(src, inflatedSize);
 		return inflater;
 	}
 
 	private static class DeltaChain extends ObjectIdOwnerMap.Entry {
 		UnresolvedDelta head;
 
 		DeltaChain(AnyObjectId id) {
 			super(id);
 		}
 
 		UnresolvedDelta remove() {
 			final UnresolvedDelta r = head;
 			if (r != null)
 				head = null;
 			return r;
 		}
 
 		void add(UnresolvedDelta d) {
 			d.next = head;
 			head = d;
 		}
 	}
 
 	/** Information about an unresolved delta in this pack stream. */
 	public static class UnresolvedDelta {
 		long position;
 
 		int crc;
 
 		UnresolvedDelta next;
 
 		/** @return offset within the input stream. */
 		public long getOffset() {
 			return position;
 		}
 
 		/** @return the CRC-32 checksum of the stored delta data. */
 		public int getCRC() {
 			return crc;
 		}
 
 		/**
 		 * @param crc32
 		 *            the CRC-32 checksum of the stored delta data.
 		 */
 		public void setCRC(int crc32) {
 			crc = crc32;
 		}
 	}
 
 	private static class DeltaVisit {
 		final UnresolvedDelta delta;
 
 		ObjectId id;
 
 		byte[] data;
 
 		DeltaVisit parent;
 
 		UnresolvedDelta nextChild;
 
 		DeltaVisit() {
 			this.delta = null; // At the root of the stack we have a base.
 		}
 
 		DeltaVisit(DeltaVisit parent) {
 			this.parent = parent;
 			this.delta = parent.nextChild;
 			parent.nextChild = delta.next;
 		}
 
 		DeltaVisit next() {
 			// If our parent has no more children, discard it.
 			if (parent != null && parent.nextChild == null) {
 				parent.data = null;
 				parent = parent.parent;
 			}
 
 			if (nextChild != null)
 				return new DeltaVisit(this);
 
 			// If we have no child ourselves, our parent must (if it exists),
 			// due to the discard rule above. With no parent, we are done.
 			if (parent != null)
 				return new DeltaVisit(parent);
 			return null;
 		}
 	}
 
 	private void addObjectAndTrack(PackedObjectInfo oe) {
 		entries[entryCount++] = oe;
 		if (needNewObjectIds())
 			newObjectIds.add(oe);
 	}
 
 	private class InflaterStream extends InputStream {
 		private final Inflater inf;
 
 		private final byte[] skipBuffer;
 
 		private Source src;
 
 		private long expectedSize;
 
 		private long actualSize;
 
 		private int p;
 
 		InflaterStream() {
 			inf = InflaterCache.get();
 			skipBuffer = new byte[512];
 		}
 
 		void release() {
 			inf.reset();
 			InflaterCache.release(inf);
 		}
 
 		void open(Source source, long inflatedSize) throws IOException {
 			src = source;
 			expectedSize = inflatedSize;
 			actualSize = 0;
 
 			p = fill(src, 1);
 			inf.setInput(buf, p, bAvail);
 		}
 
 		@Override
 		public long skip(long toSkip) throws IOException {
 			long n = 0;
 			while (n < toSkip) {
 				final int cnt = (int) Math.min(skipBuffer.length, toSkip - n);
 				final int r = read(skipBuffer, 0, cnt);
 				if (r <= 0)
 					break;
 				n += r;
 			}
 			return n;
 		}
 
 		@Override
 		public int read() throws IOException {
 			int n = read(skipBuffer, 0, 1);
 			return n == 1 ? skipBuffer[0] & 0xff : -1;
 		}
 
 		@Override
 		public int read(byte[] dst, int pos, int cnt) throws IOException {
 			try {
 				int n = 0;
 				while (n < cnt) {
 					int r = inf.inflate(dst, pos + n, cnt - n);
 					n += r;
 					if (inf.finished())
 						break;
 					if (inf.needsInput()) {
 						onObjectData(src, buf, p, bAvail);
 						use(bAvail);
 
 						p = fill(src, 1);
 						inf.setInput(buf, p, bAvail);
 					} else if (r == 0) {
 						throw new CorruptObjectException(MessageFormat.format(
 								JGitText.get().packfileCorruptionDetected,
 								JGitText.get().unknownZlibError));
 					}
 				}
 				actualSize += n;
 				return 0 < n ? n : -1;
 			} catch (DataFormatException dfe) {
 				throw new CorruptObjectException(MessageFormat.format(JGitText
 						.get().packfileCorruptionDetected, dfe.getMessage()));
 			}
 		}
 
 		@Override
 		public void close() throws IOException {
 			// We need to read here to enter the loop above and pump the
 			// trailing checksum into the Inflater. It should return -1 as the
 			// caller was supposed to consume all content.
 			//
 			if (read(skipBuffer) != -1 || actualSize != expectedSize) {
 				throw new CorruptObjectException(MessageFormat.format(JGitText
 						.get().packfileCorruptionDetected,
 						JGitText.get().wrongDecompressedLength));
 			}
 
 			int used = bAvail - inf.getRemaining();
 			if (0 < used) {
 				onObjectData(src, buf, p, used);
 				use(used);
 			}
 
 			inf.reset();
 		}
 	}
 }