/*
    * Copyright (C) 2008-2010, Google Inc.
    * Copyright (C) 2008, Marek Zawirski <marek.zawirski@gmail.com> and others
    *
    * This program and the accompanying materials are made available under the
    * terms of the Eclipse Distribution License v. 1.0 which is available at
    * https://www.eclipse.org/org/documents/edl-v10.php.
    *
    * SPDX-License-Identifier: BSD-3-Clause
   */
  
  package org.eclipse.jgit.internal.storage.pack;
  
  import static java.util.Objects.requireNonNull;
  import static org.eclipse.jgit.internal.storage.pack.StoredObjectRepresentation.PACK_DELTA;
  import static org.eclipse.jgit.internal.storage.pack.StoredObjectRepresentation.PACK_WHOLE;
  import static org.eclipse.jgit.lib.Constants.OBJECT_ID_LENGTH;
  import static org.eclipse.jgit.lib.Constants.OBJ_BLOB;
  import static org.eclipse.jgit.lib.Constants.OBJ_COMMIT;
  import static org.eclipse.jgit.lib.Constants.OBJ_TAG;
  import static org.eclipse.jgit.lib.Constants.OBJ_TREE;
  
  import java.io.IOException;
  import java.io.OutputStream;
  import java.lang.ref.WeakReference;
  import java.security.MessageDigest;
  import java.text.MessageFormat;
  import java.time.Duration;
  import java.util.ArrayList;
  import java.util.Arrays;
  import java.util.Collection;
  import java.util.Collections;
  import java.util.HashMap;
  import java.util.HashSet;
  import java.util.Iterator;
  import java.util.List;
  import java.util.Map;
  import java.util.NoSuchElementException;
  import java.util.Set;
  import java.util.concurrent.ConcurrentHashMap;
  import java.util.concurrent.ExecutionException;
  import java.util.concurrent.Executor;
  import java.util.concurrent.ExecutorService;
  import java.util.concurrent.Executors;
  import java.util.concurrent.Future;
  import java.util.concurrent.TimeUnit;
  import java.util.zip.CRC32;
  import java.util.zip.CheckedOutputStream;
  import java.util.zip.Deflater;
  import java.util.zip.DeflaterOutputStream;
  
  import org.eclipse.jgit.annotations.NonNull;
  import org.eclipse.jgit.annotations.Nullable;
  import org.eclipse.jgit.errors.CorruptObjectException;
  import org.eclipse.jgit.errors.IncorrectObjectTypeException;
  import org.eclipse.jgit.errors.LargeObjectException;
  import org.eclipse.jgit.errors.MissingObjectException;
  import org.eclipse.jgit.errors.SearchForReuseTimeout;
  import org.eclipse.jgit.errors.StoredObjectRepresentationNotAvailableException;
  import org.eclipse.jgit.internal.JGitText;
  import org.eclipse.jgit.internal.storage.file.PackBitmapIndexBuilder;
  import org.eclipse.jgit.internal.storage.file.PackBitmapIndexWriterV1;
  import org.eclipse.jgit.internal.storage.file.PackIndexWriter;
  import org.eclipse.jgit.lib.AnyObjectId;
  import org.eclipse.jgit.lib.AsyncObjectSizeQueue;
  import org.eclipse.jgit.lib.BatchingProgressMonitor;
  import org.eclipse.jgit.lib.BitmapIndex;
  import org.eclipse.jgit.lib.BitmapIndex.BitmapBuilder;
  import org.eclipse.jgit.lib.BitmapObject;
  import org.eclipse.jgit.lib.Constants;
  import org.eclipse.jgit.lib.NullProgressMonitor;
  import org.eclipse.jgit.lib.ObjectId;
  import org.eclipse.jgit.lib.ObjectIdOwnerMap;
  import org.eclipse.jgit.lib.ObjectIdSet;
  import org.eclipse.jgit.lib.ObjectLoader;
  import org.eclipse.jgit.lib.ObjectReader;
  import org.eclipse.jgit.lib.ProgressMonitor;
  import org.eclipse.jgit.lib.Repository;
  import org.eclipse.jgit.lib.ThreadSafeProgressMonitor;
  import org.eclipse.jgit.revwalk.AsyncRevObjectQueue;
  import org.eclipse.jgit.revwalk.BitmapWalker;
  import org.eclipse.jgit.revwalk.DepthWalk;
  import org.eclipse.jgit.revwalk.ObjectWalk;
  import org.eclipse.jgit.revwalk.RevCommit;
  import org.eclipse.jgit.revwalk.RevFlag;
  import org.eclipse.jgit.revwalk.RevObject;
  import org.eclipse.jgit.revwalk.RevSort;
  import org.eclipse.jgit.revwalk.RevTag;
  import org.eclipse.jgit.revwalk.RevTree;
  import org.eclipse.jgit.storage.pack.PackConfig;
  import org.eclipse.jgit.storage.pack.PackStatistics;
  import org.eclipse.jgit.transport.FilterSpec;
  import org.eclipse.jgit.transport.ObjectCountCallback;
  import org.eclipse.jgit.transport.PacketLineOut;
  import org.eclipse.jgit.transport.WriteAbortedException;
  import org.eclipse.jgit.util.BlockList;
  import org.eclipse.jgit.util.TemporaryBuffer;
  
  /**
  * <p>
  * PackWriter class is responsible for generating pack files from specified set
  * of objects from repository. This implementation produce pack files in format
  * version 2.
  * </p>
  * <p>
  * Source of objects may be specified in two ways:
  * <ul>
  * <li>(usually) by providing sets of interesting and uninteresting objects in
  * repository - all interesting objects and their ancestors except uninteresting
  * objects and their ancestors will be included in pack, or</li>
  * <li>by providing iterator of {@link org.eclipse.jgit.revwalk.RevObject}
  * specifying exact list and order of objects in pack</li>
  * </ul>
  * <p>
  * Typical usage consists of creating an instance, configuring options,
  * preparing the list of objects by calling {@link #preparePack(Iterator)} or
  * {@link #preparePack(ProgressMonitor, Set, Set)}, and streaming with
  * {@link #writePack(ProgressMonitor, ProgressMonitor, OutputStream)}. If the
  * pack is being stored as a file the matching index can be written out after
  * writing the pack by {@link #writeIndex(OutputStream)}. An optional bitmap
  * index can be made by calling {@link #prepareBitmapIndex(ProgressMonitor)}
  * followed by {@link #writeBitmapIndex(OutputStream)}.
  * </p>
  * <p>
  * Class provide set of configurable options and
  * {@link org.eclipse.jgit.lib.ProgressMonitor} support, as operations may take
  * a long time for big repositories. Deltas searching algorithm is <b>NOT
  * IMPLEMENTED</b> yet - this implementation relies only on deltas and objects
  * reuse.
  * </p>
  * <p>
  * This class is not thread safe. It is intended to be used in one thread as a
  * single pass to produce one pack. Invoking methods multiple times or out of
  * order is not supported as internal data structures are destroyed during
  * certain phases to save memory when packing large repositories.
  * </p>
  */
 public class PackWriter implements AutoCloseable {
 	private static final int PACK_VERSION_GENERATED = 2;
 
 	/** Empty set of objects for {@code preparePack()}. */
 	public static final Set<ObjectId> NONE = Collections.emptySet();
 
 	private static final Map<WeakReference<PackWriter>, Boolean> instances =
 			new ConcurrentHashMap<>();
 
 	private static final Iterable<PackWriter> instancesIterable = () -> new Iterator<>() {
 
 		private final Iterator<WeakReference<PackWriter>> it = instances
 				.keySet().iterator();
 
 		private PackWriter next;
 
 		@Override
 		public boolean hasNext() {
 			if (next != null) {
 				return true;
 			}
 			while (it.hasNext()) {
 				WeakReference<PackWriter> ref = it.next();
 				next = ref.get();
 				if (next != null) {
 					return true;
 				}
 				it.remove();
 			}
 			return false;
 		}
 
 		@Override
 		public PackWriter next() {
 			if (hasNext()) {
 				PackWriter result = next;
 				next = null;
 				return result;
 			}
 			throw new NoSuchElementException();
 		}
 
 		@Override
 		public void remove() {
 			throw new UnsupportedOperationException();
 		}
 	};
 
 	/**
 	 * Get all allocated, non-released PackWriters instances.
 	 *
 	 * @return all allocated, non-released PackWriters instances.
 	 */
 	public static Iterable<PackWriter> getInstances() {
 		return instancesIterable;
 	}
 
 	@SuppressWarnings("unchecked")
 	BlockList<ObjectToPack>[] objectsLists = new BlockList[OBJ_TAG + 1];
 	{
 		objectsLists[OBJ_COMMIT] = new BlockList<>();
 		objectsLists[OBJ_TREE] = new BlockList<>();
 		objectsLists[OBJ_BLOB] = new BlockList<>();
 		objectsLists[OBJ_TAG] = new BlockList<>();
 	}
 
 	private ObjectIdOwnerMap<ObjectToPack> objectsMap = new ObjectIdOwnerMap<>();
 
 	// edge objects for thin packs
 	private List<ObjectToPack> edgeObjects = new BlockList<>();
 
 	// Objects the client is known to have already.
 	private BitmapBuilder haveObjects;
 
 	private List<CachedPack> cachedPacks = new ArrayList<>(2);
 
 	private Set<ObjectId> tagTargets = NONE;
 
 	private Set<? extends ObjectId> excludeFromBitmapSelection = NONE;
 
 	private ObjectIdSet[] excludeInPacks;
 
 	private ObjectIdSet excludeInPackLast;
 
 	private Deflater myDeflater;
 
 	private final ObjectReader reader;
 
 	/** {@link #reader} recast to the reuse interface, if it supports it. */
 	private final ObjectReuseAsIs reuseSupport;
 
 	final PackConfig config;
 
 	private final PackStatistics.Accumulator stats;
 
 	private final MutableState state;
 
 	private final WeakReference<PackWriter> selfRef;
 
 	private PackStatistics.ObjectType.Accumulator typeStats;
 
 	private List<ObjectToPack> sortedByName;
 
 	private byte[] packcsum;
 
 	private boolean deltaBaseAsOffset;
 
 	private boolean reuseDeltas;
 
 	private boolean reuseDeltaCommits;
 
 	private boolean reuseValidate;
 
 	private boolean thin;
 
 	private boolean useCachedPacks;
 
 	private boolean useBitmaps;
 
 	private boolean ignoreMissingUninteresting = true;
 
 	private boolean pruneCurrentObjectList;
 
 	private boolean shallowPack;
 
 	private boolean canBuildBitmaps;
 
 	private boolean indexDisabled;
 
 	private boolean checkSearchForReuseTimeout = false;
 
 	private final Duration searchForReuseTimeout;
 
 	private long searchForReuseStartTimeEpoc;
 
 	private int depth;
 
 	private Collection<? extends ObjectId> unshallowObjects;
 
 	private PackBitmapIndexBuilder writeBitmaps;
 
 	private CRC32 crc32;
 
 	private ObjectCountCallback callback;
 
 	private FilterSpec filterSpec = FilterSpec.NO_FILTER;
 
 	private PackfileUriConfig packfileUriConfig;
 
 	/**
 	 * Create writer for specified repository.
 	 * <p>
 	 * Objects for packing are specified in {@link #preparePack(Iterator)} or
 	 * {@link #preparePack(ProgressMonitor, Set, Set)}.
 	 *
 	 * @param repo
 	 *            repository where objects are stored.
 	 */
 	public PackWriter(Repository repo) {
 		this(repo, repo.newObjectReader());
 	}
 
 	/**
 	 * Create a writer to load objects from the specified reader.
 	 * <p>
 	 * Objects for packing are specified in {@link #preparePack(Iterator)} or
 	 * {@link #preparePack(ProgressMonitor, Set, Set)}.
 	 *
 	 * @param reader
 	 *            reader to read from the repository with.
 	 */
 	public PackWriter(ObjectReader reader) {
 		this(new PackConfig(), reader);
 	}
 
 	/**
 	 * Create writer for specified repository.
 	 * <p>
 	 * Objects for packing are specified in {@link #preparePack(Iterator)} or
 	 * {@link #preparePack(ProgressMonitor, Set, Set)}.
 	 *
 	 * @param repo
 	 *            repository where objects are stored.
 	 * @param reader
 	 *            reader to read from the repository with.
 	 */
 	public PackWriter(Repository repo, ObjectReader reader) {
 		this(new PackConfig(repo), reader);
 	}
 
 	/**
 	 * Create writer with a specified configuration.
 	 * <p>
 	 * Objects for packing are specified in {@link #preparePack(Iterator)} or
 	 * {@link #preparePack(ProgressMonitor, Set, Set)}.
 	 *
 	 * @param config
 	 *            configuration for the pack writer.
 	 * @param reader
 	 *            reader to read from the repository with.
 	 */
 	public PackWriter(PackConfig config, ObjectReader reader) {
 		this(config, reader, null);
 	}
 
 	/**
 	 * Create writer with a specified configuration.
 	 * <p>
 	 * Objects for packing are specified in {@link #preparePack(Iterator)} or
 	 * {@link #preparePack(ProgressMonitor, Set, Set)}.
 	 *
 	 * @param config
 	 *            configuration for the pack writer.
 	 * @param reader
 	 *            reader to read from the repository with.
 	 * @param statsAccumulator
 	 *            accumulator for statics
 	 */
 	public PackWriter(PackConfig config, final ObjectReader reader,
 			@Nullable PackStatistics.Accumulator statsAccumulator) {
 		this.config = config;
 		this.reader = reader;
 		if (reader instanceof ObjectReuseAsIs)
 			reuseSupport = ((ObjectReuseAsIs) reader);
 		else
 			reuseSupport = null;
 
 		deltaBaseAsOffset = config.isDeltaBaseAsOffset();
 		reuseDeltas = config.isReuseDeltas();
 		searchForReuseTimeout = config.getSearchForReuseTimeout();
 		reuseValidate = true; // be paranoid by default
 		stats = statsAccumulator != null ? statsAccumulator
 				: new PackStatistics.Accumulator();
 		state = new MutableState();
 		selfRef = new WeakReference<>(this);
 		instances.put(selfRef, Boolean.TRUE);
 	}
 
 	/**
 	 * Set the {@code ObjectCountCallback}.
 	 * <p>
 	 * It should be set before calling
 	 * {@link #writePack(ProgressMonitor, ProgressMonitor, OutputStream)}.
 	 *
 	 * @param callback
 	 *            the callback to set
 	 * @return this object for chaining.
 	 */
 	public PackWriter setObjectCountCallback(ObjectCountCallback callback) {
 		this.callback = callback;
 		return this;
 	}
 
 	/**
 	 * Records the set of shallow commits in the client.
 	 *
 	 * @param clientShallowCommits
 	 *            the shallow commits in the client
 	 */
 	public void setClientShallowCommits(Set<ObjectId> clientShallowCommits) {
 		stats.clientShallowCommits = Collections
 				.unmodifiableSet(new HashSet<>(clientShallowCommits));
 	}
 
 	/**
 	 * Check whether writer can store delta base as an offset (new style
 	 * reducing pack size) or should store it as an object id (legacy style,
 	 * compatible with old readers).
 	 *
 	 * Default setting: {@value PackConfig#DEFAULT_DELTA_BASE_AS_OFFSET}
 	 *
 	 * @return true if delta base is stored as an offset; false if it is stored
 	 *         as an object id.
 	 */
 	public boolean isDeltaBaseAsOffset() {
 		return deltaBaseAsOffset;
 	}
 
 	/**
 	 * Check whether the search for reuse phase is taking too long. This could
 	 * be the case when the number of objects and pack files is high and the
 	 * system is under pressure. If that's the case and
 	 * checkSearchForReuseTimeout is true abort the search.
 	 *
 	 * @throws SearchForReuseTimeout
 	 *             if the search for reuse is taking too long.
 	 */
 	public void checkSearchForReuseTimeout() throws SearchForReuseTimeout {
 		if (checkSearchForReuseTimeout
 				&& Duration.ofMillis(System.currentTimeMillis()
 						- searchForReuseStartTimeEpoc)
 				.compareTo(searchForReuseTimeout) > 0) {
 			throw new SearchForReuseTimeout(searchForReuseTimeout);
 		}
 	}
 
 	/**
 	 * Set writer delta base format. Delta base can be written as an offset in a
 	 * pack file (new approach reducing file size) or as an object id (legacy
 	 * approach, compatible with old readers).
 	 *
 	 * Default setting: {@value PackConfig#DEFAULT_DELTA_BASE_AS_OFFSET}
 	 *
 	 * @param deltaBaseAsOffset
 	 *            boolean indicating whether delta base can be stored as an
 	 *            offset.
 	 */
 	public void setDeltaBaseAsOffset(boolean deltaBaseAsOffset) {
 		this.deltaBaseAsOffset = deltaBaseAsOffset;
 	}
 
 	/**
 	 * Set the writer to check for long search for reuse, exceeding the timeout.
 	 * Selecting an object representation can be an expensive operation. It is
 	 * possible to set a max search for reuse time (see
 	 * PackConfig#CONFIG_KEY_SEARCH_FOR_REUSE_TIMEOUT for more details).
 	 *
 	 * However some operations, i.e.: GC, need to find the best candidate
 	 * regardless how much time the operation will need to finish.
 	 *
 	 * This method enables the search for reuse timeout check, otherwise
 	 * disabled.
 	 */
 	public void enableSearchForReuseTimeout() {
 		this.checkSearchForReuseTimeout = true;
 	}
 
 	/**
 	 * Check if the writer will reuse commits that are already stored as deltas.
 	 *
 	 * @return true if the writer would reuse commits stored as deltas, assuming
 	 *         delta reuse is already enabled.
 	 */
 	public boolean isReuseDeltaCommits() {
 		return reuseDeltaCommits;
 	}
 
 	/**
 	 * Set the writer to reuse existing delta versions of commits.
 	 *
 	 * @param reuse
 	 *            if true, the writer will reuse any commits stored as deltas.
 	 *            By default the writer does not reuse delta commits.
 	 */
 	public void setReuseDeltaCommits(boolean reuse) {
 		reuseDeltaCommits = reuse;
 	}
 
 	/**
 	 * Check if the writer validates objects before copying them.
 	 *
 	 * @return true if validation is enabled; false if the reader will handle
 	 *         object validation as a side-effect of it consuming the output.
 	 */
 	public boolean isReuseValidatingObjects() {
 		return reuseValidate;
 	}
 
 	/**
 	 * Enable (or disable) object validation during packing.
 	 *
 	 * @param validate
 	 *            if true the pack writer will validate an object before it is
 	 *            put into the output. This additional validation work may be
 	 *            necessary to avoid propagating corruption from one local pack
 	 *            file to another local pack file.
 	 */
 	public void setReuseValidatingObjects(boolean validate) {
 		reuseValidate = validate;
 	}
 
 	/**
 	 * Whether this writer is producing a thin pack.
 	 *
 	 * @return true if this writer is producing a thin pack.
 	 */
 	public boolean isThin() {
 		return thin;
 	}
 
 	/**
 	 * Whether writer may pack objects with delta base object not within set of
 	 * objects to pack
 	 *
 	 * @param packthin
 	 *            a boolean indicating whether writer may pack objects with
 	 *            delta base object not within set of objects to pack, but
 	 *            belonging to party repository (uninteresting/boundary) as
 	 *            determined by set; this kind of pack is used only for
 	 *            transport; true - to produce thin pack, false - otherwise.
 	 */
 	public void setThin(boolean packthin) {
 		thin = packthin;
 	}
 
 	/**
 	 * Whether to reuse cached packs.
 	 *
 	 * @return {@code true} to reuse cached packs. If true index creation isn't
 	 *         available.
 	 */
 	public boolean isUseCachedPacks() {
 		return useCachedPacks;
 	}
 
 	/**
 	 * Whether to use cached packs
 	 *
 	 * @param useCached
 	 *            if set to {@code true} and a cached pack is present, it will
 	 *            be appended onto the end of a thin-pack, reducing the amount
 	 *            of working set space and CPU used by PackWriter. Enabling this
 	 *            feature prevents PackWriter from creating an index for the
 	 *            newly created pack, so its only suitable for writing to a
 	 *            network client, where the client will make the index.
 	 */
 	public void setUseCachedPacks(boolean useCached) {
 		useCachedPacks = useCached;
 	}
 
 	/**
 	 * Whether to use bitmaps
 	 *
 	 * @return {@code true} to use bitmaps for ObjectWalks, if available.
 	 */
 	public boolean isUseBitmaps() {
 		return useBitmaps;
 	}
 
 	/**
 	 * Whether to use bitmaps
 	 *
 	 * @param useBitmaps
 	 *            if set to true, bitmaps will be used when preparing a pack.
 	 */
 	public void setUseBitmaps(boolean useBitmaps) {
 		this.useBitmaps = useBitmaps;
 	}
 
 	/**
 	 * Whether the index file cannot be created by this PackWriter.
 	 *
 	 * @return {@code true} if the index file cannot be created by this
 	 *         PackWriter.
 	 */
 	public boolean isIndexDisabled() {
 		return indexDisabled || !cachedPacks.isEmpty();
 	}
 
 	/**
 	 * Whether to disable creation of the index file.
 	 *
 	 * @param noIndex
 	 *            {@code true} to disable creation of the index file.
 	 */
 	public void setIndexDisabled(boolean noIndex) {
 		this.indexDisabled = noIndex;
 	}
 
 	/**
 	 * Whether to ignore missing uninteresting objects
 	 *
 	 * @return {@code true} to ignore objects that are uninteresting and also
 	 *         not found on local disk; false to throw a
 	 *         {@link org.eclipse.jgit.errors.MissingObjectException} out of
 	 *         {@link #preparePack(ProgressMonitor, Set, Set)} if an
 	 *         uninteresting object is not in the source repository. By default,
 	 *         true, permitting gracefully ignoring of uninteresting objects.
 	 */
 	public boolean isIgnoreMissingUninteresting() {
 		return ignoreMissingUninteresting;
 	}
 
 	/**
 	 * Whether writer should ignore non existing uninteresting objects
 	 *
 	 * @param ignore
 	 *            {@code true} if writer should ignore non existing
 	 *            uninteresting objects during construction set of objects to
 	 *            pack; false otherwise - non existing uninteresting objects may
 	 *            cause {@link org.eclipse.jgit.errors.MissingObjectException}
 	 */
 	public void setIgnoreMissingUninteresting(boolean ignore) {
 		ignoreMissingUninteresting = ignore;
 	}
 
 	/**
 	 * Set the tag targets that should be hoisted earlier during packing.
 	 * <p>
 	 * Callers may put objects into this set before invoking any of the
 	 * preparePack methods to influence where an annotated tag's target is
 	 * stored within the resulting pack. Typically these will be clustered
 	 * together, and hoisted earlier in the file even if they are ancient
 	 * revisions, allowing readers to find tag targets with better locality.
 	 *
 	 * @param objects
 	 *            objects that annotated tags point at.
 	 */
 	public void setTagTargets(Set<ObjectId> objects) {
 		tagTargets = objects;
 	}
 
 	/**
 	 * Configure this pack for a shallow clone.
 	 *
 	 * @param depth
 	 *            maximum depth of history to return. 1 means return only the
 	 *            "wants".
 	 * @param unshallow
 	 *            objects which used to be shallow on the client, but are being
 	 *            extended as part of this fetch
 	 */
 	public void setShallowPack(int depth,
 			Collection<? extends ObjectId> unshallow) {
 		this.shallowPack = true;
 		this.depth = depth;
 		this.unshallowObjects = unshallow;
 	}
 
 	/**
 	 * @param filter the filter which indicates what and what not this writer
 	 *            should include
 	 */
 	public void setFilterSpec(@NonNull FilterSpec filter) {
 		filterSpec = requireNonNull(filter);
 	}
 
 	/**
 	 * @param config configuration related to packfile URIs
 	 * @since 5.5
 	 */
 	public void setPackfileUriConfig(PackfileUriConfig config) {
 		packfileUriConfig = config;
 	}
 
 	/**
 	 * Returns objects number in a pack file that was created by this writer.
 	 *
 	 * @return number of objects in pack.
 	 * @throws java.io.IOException
 	 *             a cached pack cannot supply its object count.
 	 */
 	public long getObjectCount() throws IOException {
 		if (stats.totalObjects == 0) {
 			long objCnt = 0;
 
 			objCnt += objectsLists[OBJ_COMMIT].size();
 			objCnt += objectsLists[OBJ_TREE].size();
 			objCnt += objectsLists[OBJ_BLOB].size();
 			objCnt += objectsLists[OBJ_TAG].size();
 
 			for (CachedPack pack : cachedPacks)
 				objCnt += pack.getObjectCount();
 			return objCnt;
 		}
 		return stats.totalObjects;
 	}
 
 	private long getUnoffloadedObjectCount() throws IOException {
 		long objCnt = 0;
 
 		objCnt += objectsLists[OBJ_COMMIT].size();
 		objCnt += objectsLists[OBJ_TREE].size();
 		objCnt += objectsLists[OBJ_BLOB].size();
 		objCnt += objectsLists[OBJ_TAG].size();
 
 		for (CachedPack pack : cachedPacks) {
 			CachedPackUriProvider.PackInfo packInfo =
 				packfileUriConfig.cachedPackUriProvider.getInfo(
 					pack, packfileUriConfig.protocolsSupported);
 			if (packInfo == null) {
 				objCnt += pack.getObjectCount();
 			}
 		}
 
 		return objCnt;
 	}
 
 	/**
 	 * Returns the object ids in the pack file that was created by this writer.
 	 * <p>
 	 * This method can only be invoked after
 	 * {@link #writePack(ProgressMonitor, ProgressMonitor, OutputStream)} has
 	 * been invoked and completed successfully.
 	 *
 	 * @return set of objects in pack.
 	 * @throws java.io.IOException
 	 *             a cached pack cannot supply its object ids.
 	 */
 	public ObjectIdOwnerMap<ObjectIdOwnerMap.Entry> getObjectSet()
 			throws IOException {
 		if (!cachedPacks.isEmpty())
 			throw new IOException(
 					JGitText.get().cachedPacksPreventsListingObjects);
 
 		if (writeBitmaps != null) {
 			return writeBitmaps.getObjectSet();
 		}
 
 		ObjectIdOwnerMap<ObjectIdOwnerMap.Entry> r = new ObjectIdOwnerMap<>();
 		for (BlockList<ObjectToPack> objList : objectsLists) {
 			if (objList != null) {
 				for (ObjectToPack otp : objList)
 					r.add(new ObjectIdOwnerMap.Entry(otp) {
 						// A new entry that copies the ObjectId
 					});
 			}
 		}
 		return r;
 	}
 
 	/**
 	 * Add a pack index whose contents should be excluded from the result.
 	 *
 	 * @param idx
 	 *            objects in this index will not be in the output pack.
 	 */
 	public void excludeObjects(ObjectIdSet idx) {
 		if (excludeInPacks == null) {
 			excludeInPacks = new ObjectIdSet[] { idx };
 			excludeInPackLast = idx;
 		} else {
 			int cnt = excludeInPacks.length;
 			ObjectIdSet[] newList = new ObjectIdSet[cnt + 1];
 			System.arraycopy(excludeInPacks, 0, newList, 0, cnt);
 			newList[cnt] = idx;
 			excludeInPacks = newList;
 		}
 	}
 
 	/**
 	 * Prepare the list of objects to be written to the pack stream.
 	 * <p>
 	 * Iterator <b>exactly</b> determines which objects are included in a pack
 	 * and order they appear in pack (except that objects order by type is not
 	 * needed at input). This order should conform general rules of ordering
 	 * objects in git - by recency and path (type and delta-base first is
 	 * internally secured) and responsibility for guaranteeing this order is on
 	 * a caller side. Iterator must return each id of object to write exactly
 	 * once.
 	 * </p>
 	 *
 	 * @param objectsSource
 	 *            iterator of object to store in a pack; order of objects within
 	 *            each type is important, ordering by type is not needed;
 	 *            allowed types for objects are
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_COMMIT},
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_TREE},
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_BLOB} and
 	 *            {@link org.eclipse.jgit.lib.Constants#OBJ_TAG}; objects
 	 *            returned by iterator may be later reused by caller as object
 	 *            id and type are internally copied in each iteration.
 	 * @throws java.io.IOException
 	 *             when some I/O problem occur during reading objects.
 	 */
 	public void preparePack(@NonNull Iterator<RevObject> objectsSource)
 			throws IOException {
 		while (objectsSource.hasNext()) {
 			addObject(objectsSource.next());
 		}
 	}
 
 	/**
 	 * Prepare the list of objects to be written to the pack stream.
 	 *
 	 * <p>
 	 * PackWriter will concat and write out the specified packs as-is.
 	 *
 	 * @param c
 	 *            cached packs to be written.
 	 */
 	public void preparePack(Collection<? extends CachedPack> c) {
 		cachedPacks.addAll(c);
 	}
 
 	/**
 	 * Prepare the list of objects to be written to the pack stream.
 	 * <p>
 	 * Basing on these 2 sets, another set of objects to put in a pack file is
 	 * created: this set consists of all objects reachable (ancestors) from
 	 * interesting objects, except uninteresting objects and their ancestors.
 	 * This method uses class {@link org.eclipse.jgit.revwalk.ObjectWalk}
 	 * extensively to find out that appropriate set of output objects and their
 	 * optimal order in output pack. Order is consistent with general git
 	 * in-pack rules: sort by object type, recency, path and delta-base first.
 	 * </p>
 	 *
 	 * @param countingMonitor
 	 *            progress during object enumeration.
 	 * @param want
 	 *            collection of objects to be marked as interesting (start
 	 *            points of graph traversal). Must not be {@code null}.
 	 * @param have
 	 *            collection of objects to be marked as uninteresting (end
 	 *            points of graph traversal). Pass {@link #NONE} if all objects
 	 *            reachable from {@code want} are desired, such as when serving
 	 *            a clone.
 	 * @throws java.io.IOException
 	 *             when some I/O problem occur during reading objects.
 	 */
 	public void preparePack(ProgressMonitor countingMonitor,
 			@NonNull Set<? extends ObjectId> want,
 			@NonNull Set<? extends ObjectId> have) throws IOException {
 		preparePack(countingMonitor, want, have, NONE, NONE);
 	}
 
 	/**
 	 * Prepare the list of objects to be written to the pack stream.
 	 * <p>
 	 * Like {@link #preparePack(ProgressMonitor, Set, Set)} but also allows
 	 * specifying commits that should not be walked past ("shallow" commits).
 	 * The caller is responsible for filtering out commits that should not be
 	 * shallow any more ("unshallow" commits as in {@link #setShallowPack}) from
 	 * the shallow set.
 	 *
 	 * @param countingMonitor
 	 *            progress during object enumeration.
 	 * @param want
 	 *            objects of interest, ancestors of which will be included in
 	 *            the pack. Must not be {@code null}.
 	 * @param have
 	 *            objects whose ancestors (up to and including {@code shallow}
 	 *            commits) do not need to be included in the pack because they
 	 *            are already available from elsewhere. Must not be
 	 *            {@code null}.
 	 * @param shallow
 	 *            commits indicating the boundary of the history marked with
 	 *            {@code have}. Shallow commits have parents but those parents
 	 *            are considered not to be already available. Parents of
 	 *            {@code shallow} commits and earlier generations will be
 	 *            included in the pack if requested by {@code want}. Must not be
 	 *            {@code null}.
 	 * @throws java.io.IOException
 	 *             an I/O problem occurred while reading objects.
 	 */
 	public void preparePack(ProgressMonitor countingMonitor,
 			@NonNull Set<? extends ObjectId> want,
 			@NonNull Set<? extends ObjectId> have,
 			@NonNull Set<? extends ObjectId> shallow) throws IOException {
 		preparePack(countingMonitor, want, have, shallow, NONE);
 	}
 
 	/**
 	 * Prepare the list of objects to be written to the pack stream.
 	 * <p>
 	 * Like {@link #preparePack(ProgressMonitor, Set, Set)} but also allows
 	 * specifying commits that should not be walked past ("shallow" commits).
 	 * The caller is responsible for filtering out commits that should not be
 	 * shallow any more ("unshallow" commits as in {@link #setShallowPack}) from
 	 * the shallow set.
 	 *
 	 * @param countingMonitor
 	 *            progress during object enumeration.
 	 * @param want
 	 *            objects of interest, ancestors of which will be included in
 	 *            the pack. Must not be {@code null}.
 	 * @param have
 	 *            objects whose ancestors (up to and including {@code shallow}
 	 *            commits) do not need to be included in the pack because they
 	 *            are already available from elsewhere. Must not be
 	 *            {@code null}.
 	 * @param shallow
 	 *            commits indicating the boundary of the history marked with
 	 *            {@code have}. Shallow commits have parents but those parents
 	 *            are considered not to be already available. Parents of
 	 *            {@code shallow} commits and earlier generations will be
 	 *            included in the pack if requested by {@code want}. Must not be
 	 *            {@code null}.
 	 * @param noBitmaps
 	 *            collection of objects to be excluded from bitmap commit
 	 *            selection.
 	 * @throws java.io.IOException
 	 *             an I/O problem occurred while reading objects.
 	 */
 	public void preparePack(ProgressMonitor countingMonitor,
 			@NonNull Set<? extends ObjectId> want,
 			@NonNull Set<? extends ObjectId> have,
 			@NonNull Set<? extends ObjectId> shallow,
 			@NonNull Set<? extends ObjectId> noBitmaps) throws IOException {
 		try (ObjectWalk ow = getObjectWalk()) {
 			ow.assumeShallow(shallow);
 			preparePack(countingMonitor, ow, want, have, noBitmaps);
 		}
 	}
 
 	private ObjectWalk getObjectWalk() {
 		return shallowPack ? new DepthWalk.ObjectWalk(reader, depth - 1)
 				: new ObjectWalk(reader);
 	}
 
 	/**
 	 * A visitation policy which uses the depth at which the object is seen to
 	 * decide if re-traversal is necessary. In particular, if the object has
 	 * already been visited at this depth or shallower, it is not necessary to
 	 * re-visit at this depth.
 	 */
 	private static class DepthAwareVisitationPolicy
 			implements ObjectWalk.VisitationPolicy {
 		private final Map<ObjectId, Integer> lowestDepthVisited = new HashMap<>();
 
 		private final ObjectWalk walk;
 
 		DepthAwareVisitationPolicy(ObjectWalk walk) {
 			this.walk = requireNonNull(walk);
 		}
 
 		@Override
 		public boolean shouldVisit(RevObject o) {
 			Integer lastDepth = lowestDepthVisited.get(o);
 			if (lastDepth == null) {
 				return true;
 			}
 			return walk.getTreeDepth() < lastDepth.intValue();
 		}
 
 		@Override
 		public void visited(RevObject o) {
 			lowestDepthVisited.put(o, Integer.valueOf(walk.getTreeDepth()));
 		}
 	}
 
 	/**
 	 * Prepare the list of objects to be written to the pack stream.
 	 * <p>
 	 * Basing on these 2 sets, another set of objects to put in a pack file is
 	 * created: this set consists of all objects reachable (ancestors) from
 	 * interesting objects, except uninteresting objects and their ancestors.
 	 * This method uses class {@link org.eclipse.jgit.revwalk.ObjectWalk}
 	 * extensively to find out that appropriate set of output objects and their
 	 * optimal order in output pack. Order is consistent with general git
 	 * in-pack rules: sort by object type, recency, path and delta-base first.
 	 * </p>
 	 *
 	 * @param countingMonitor
 	 *            progress during object enumeration.
 	 * @param walk
 	 *            ObjectWalk to perform enumeration.
 	 * @param interestingObjects
 	 *            collection of objects to be marked as interesting (start
 	 *            points of graph traversal). Must not be {@code null}.
 	 * @param uninterestingObjects
 	 *            collection of objects to be marked as uninteresting (end
 	 *            points of graph traversal). Pass {@link #NONE} if all objects
 	 *            reachable from {@code want} are desired, such as when serving
 	 *            a clone.
 	 * @param noBitmaps
 	 *            collection of objects to be excluded from bitmap commit
 	 *            selection.
 	 * @throws java.io.IOException
 	 *             when some I/O problem occur during reading objects.
 	 */
 	public void preparePack(ProgressMonitor countingMonitor,
 			@NonNull ObjectWalk walk,
 			@NonNull Set<? extends ObjectId> interestingObjects,
 			@NonNull Set<? extends ObjectId> uninterestingObjects,
 			@NonNull Set<? extends ObjectId> noBitmaps)
 			throws IOException {
 		if (countingMonitor == null)
 			countingMonitor = NullProgressMonitor.INSTANCE;
 		if (shallowPack && !(walk instanceof DepthWalk.ObjectWalk))
 			throw new IllegalArgumentException(
 					JGitText.get().shallowPacksRequireDepthWalk);
 		if (filterSpec.getTreeDepthLimit() >= 0) {
 			walk.setVisitationPolicy(new DepthAwareVisitationPolicy(walk));
 		}
 		findObjectsToPack(countingMonitor, walk, interestingObjects,
 				uninterestingObjects, noBitmaps);
 	}
 
 	/**
 	 * Determine if the pack file will contain the requested object.
 	 *
 	 * @param id
 	 *            the object to test the existence of.
 	 * @return true if the object will appear in the output pack file.
 	 * @throws java.io.IOException
 	 *             a cached pack cannot be examined.
 	 */
 	public boolean willInclude(AnyObjectId id) throws IOException {
 		ObjectToPack obj = objectsMap.get(id);
 		return obj != null && !obj.isEdge();
 	}
 
 	/**
 	 * Lookup the ObjectToPack object for a given ObjectId.
 	 *
 	 * @param id
 	 *            the object to find in the pack.
 	 * @return the object we are packing, or null.
 	 */
 	public ObjectToPack get(AnyObjectId id) {
 		ObjectToPack obj = objectsMap.get(id);
 		return obj != null && !obj.isEdge() ? obj : null;
 	}
 
 	/**
 	 * Computes SHA-1 of lexicographically sorted objects ids written in this
 	 * pack, as used to name a pack file in repository.
 	 *
 	 * @return ObjectId representing SHA-1 name of a pack that was created.
 	 */
 	public ObjectId computeName() {
 		final byte[] buf = new byte[OBJECT_ID_LENGTH];
 		final MessageDigest md = Constants.newMessageDigest();
 		for (ObjectToPack otp : sortByName()) {
 			otp.copyRawTo(buf, 0);
 			md.update(buf, 0, OBJECT_ID_LENGTH);
 		}
 		return ObjectId.fromRaw(md.digest());
 	}
 
 	/**
 	 * Returns the index format version that will be written.
 	 * <p>
 	 * This method can only be invoked after
 	 * {@link #writePack(ProgressMonitor, ProgressMonitor, OutputStream)} has
 	 * been invoked and completed successfully.
 	 *
 	 * @return the index format version.
 	 */
 	public int getIndexVersion() {
 		int indexVersion = config.getIndexVersion();
 		if (indexVersion <= 0) {
 			for (BlockList<ObjectToPack> objs : objectsLists)
 				indexVersion = Math.max(indexVersion,
 						PackIndexWriter.oldestPossibleFormat(objs));
 		}
 		return indexVersion;
 	}
 
 	/**
 	 * Create an index file to match the pack file just written.
 	 * <p>
 	 * Called after
 	 * {@link #writePack(ProgressMonitor, ProgressMonitor, OutputStream)}.
 	 * <p>
 	 * Writing an index is only required for local pack storage. Packs sent on
 	 * the network do not need to create an index.
 	 *
 	 * @param indexStream
 	 *            output for the index data. Caller is responsible for closing
 	 *            this stream.
 	 * @throws java.io.IOException
 	 *             the index data could not be written to the supplied stream.
 	 */
 	public void writeIndex(OutputStream indexStream) throws IOException {
 		if (isIndexDisabled())
 			throw new IOException(JGitText.get().cachedPacksPreventsIndexCreation);
 
 		long writeStart = System.currentTimeMillis();
 		final PackIndexWriter iw = PackIndexWriter.createVersion(
 				indexStream, getIndexVersion());
 		iw.write(sortByName(), packcsum);
 		stats.timeWriting += System.currentTimeMillis() - writeStart;
 	}
 
 	/**
 	 * Create a bitmap index file to match the pack file just written.
 	 * <p>
 	 * Called after {@link #prepareBitmapIndex(ProgressMonitor)}.
 	 *
 	 * @param bitmapIndexStream
 	 *            output for the bitmap index data. Caller is responsible for
 	 *            closing this stream.
 	 * @throws java.io.IOException
 	 *             the index data could not be written to the supplied stream.
 	 */
 	public void writeBitmapIndex(OutputStream bitmapIndexStream)
 			throws IOException {
 		if (writeBitmaps == null)
 			throw new IOException(JGitText.get().bitmapsMustBePrepared);
 
 		long writeStart = System.currentTimeMillis();
 		final PackBitmapIndexWriterV1 iw = new PackBitmapIndexWriterV1(bitmapIndexStream);
 		iw.write(writeBitmaps, packcsum);
 		stats.timeWriting += System.currentTimeMillis() - writeStart;
 	}
 
 	private List<ObjectToPack> sortByName() {
 		if (sortedByName == null) {
 			int cnt = 0;
 			cnt += objectsLists[OBJ_COMMIT].size();
 			cnt += objectsLists[OBJ_TREE].size();
 			cnt += objectsLists[OBJ_BLOB].size();
 			cnt += objectsLists[OBJ_TAG].size();
 
 			sortedByName = new BlockList<>(cnt);
 			sortedByName.addAll(objectsLists[OBJ_COMMIT]);
 			sortedByName.addAll(objectsLists[OBJ_TREE]);
 			sortedByName.addAll(objectsLists[OBJ_BLOB]);
 			sortedByName.addAll(objectsLists[OBJ_TAG]);
 			Collections.sort(sortedByName);
 		}
 		return sortedByName;
 	}
 
 	private void beginPhase(PackingPhase phase, ProgressMonitor monitor,
 			long cnt) {
 		state.phase = phase;
 		String task;
 		switch (phase) {
 		case COUNTING:
 			task = JGitText.get().countingObjects;
 			break;
 		case GETTING_SIZES:
 			task = JGitText.get().searchForSizes;
 			break;
 		case FINDING_SOURCES:
 			task = JGitText.get().searchForReuse;
 			break;
 		case COMPRESSING:
 			task = JGitText.get().compressingObjects;
 			break;
 		case WRITING:
 			task = JGitText.get().writingObjects;
 			break;
 		case BUILDING_BITMAPS:
 			task = JGitText.get().buildingBitmaps;
 			break;
 		default:
 			throw new IllegalArgumentException(
 					MessageFormat.format(JGitText.get().illegalPackingPhase, phase));
 		}
 		monitor.beginTask(task, (int) cnt);
 	}
 
 	private void endPhase(ProgressMonitor monitor) {
 		monitor.endTask();
 	}
 
 	/**
 	 * Write the prepared pack to the supplied stream.
 	 * <p>
 	 * Called after
 	 * {@link #preparePack(ProgressMonitor, ObjectWalk, Set, Set, Set)} or
 	 * {@link #preparePack(ProgressMonitor, Set, Set)}.
 	 * <p>
 	 * Performs delta search if enabled and writes the pack stream.
 	 * <p>
 	 * All reused objects data checksum (Adler32/CRC32) is computed and
 	 * validated against existing checksum.
 	 *
 	 * @param compressMonitor
 	 *            progress monitor to report object compression work.
 	 * @param writeMonitor
 	 *            progress monitor to report the number of objects written.
 	 * @param packStream
 	 *            output stream of pack data. The stream should be buffered by
 	 *            the caller. The caller is responsible for closing the stream.
 	 * @throws java.io.IOException
 	 *             an error occurred reading a local object's data to include in
 	 *             the pack, or writing compressed object data to the output
 	 *             stream.
 	 * @throws WriteAbortedException
 	 *             the write operation is aborted by
 	 *             {@link org.eclipse.jgit.transport.ObjectCountCallback} .
 	 */
 	public void writePack(ProgressMonitor compressMonitor,
 			ProgressMonitor writeMonitor, OutputStream packStream)
 			throws IOException {
 		if (compressMonitor == null)
 			compressMonitor = NullProgressMonitor.INSTANCE;
 		if (writeMonitor == null)
 			writeMonitor = NullProgressMonitor.INSTANCE;
 
 		excludeInPacks = null;
 		excludeInPackLast = null;
 
 		boolean needSearchForReuse = reuseSupport != null && (
 				   reuseDeltas
 				|| config.isReuseObjects()
 				|| !cachedPacks.isEmpty());
 
 		if (compressMonitor instanceof BatchingProgressMonitor) {
 			long delay = 1000;
 			if (needSearchForReuse && config.isDeltaCompress())
 				delay = 500;
 			((BatchingProgressMonitor) compressMonitor).setDelayStart(
 					delay,
 					TimeUnit.MILLISECONDS);
 		}
 
 		if (needSearchForReuse)
 			searchForReuse(compressMonitor);
 		if (config.isDeltaCompress())
 			searchForDeltas(compressMonitor);
 
 		crc32 = new CRC32();
 		final PackOutputStream out = new PackOutputStream(
 			writeMonitor,
 			isIndexDisabled()
 				? packStream
 				: new CheckedOutputStream(packStream, crc32),
 			this);
 
 		long objCnt = packfileUriConfig == null ? getObjectCount() :
 			getUnoffloadedObjectCount();
 		stats.totalObjects = objCnt;
 		if (callback != null)
 			callback.setObjectCount(objCnt);
 		beginPhase(PackingPhase.WRITING, writeMonitor, objCnt);
 		long writeStart = System.currentTimeMillis();
 		try {
 			List<CachedPack> unwrittenCachedPacks;
 
 			if (packfileUriConfig != null) {
 				unwrittenCachedPacks = new ArrayList<>();
 				CachedPackUriProvider p = packfileUriConfig.cachedPackUriProvider;
 				PacketLineOut o = packfileUriConfig.pckOut;
 
 				o.writeString("packfile-uris\n"); //$NON-NLS-1$
 				for (CachedPack pack : cachedPacks) {
 					CachedPackUriProvider.PackInfo packInfo = p.getInfo(
 							pack, packfileUriConfig.protocolsSupported);
 					if (packInfo != null) {
 						o.writeString(packInfo.getHash() + ' ' +
 								packInfo.getUri() + '\n');
 						stats.offloadedPackfiles += 1;
 						stats.offloadedPackfileSize += packInfo.getSize();
 					} else {
 						unwrittenCachedPacks.add(pack);
 					}
 				}
 				packfileUriConfig.pckOut.writeDelim();
 				packfileUriConfig.pckOut.writeString("packfile\n"); //$NON-NLS-1$
 			} else {
 				unwrittenCachedPacks = cachedPacks;
 			}
 
 			out.writeFileHeader(PACK_VERSION_GENERATED, objCnt);
 			out.flush();
 
 			writeObjects(out);
 			if (!edgeObjects.isEmpty() || !cachedPacks.isEmpty()) {
 				for (PackStatistics.ObjectType.Accumulator typeStat : stats.objectTypes) {
 					if (typeStat == null)
 						continue;
 					stats.thinPackBytes += typeStat.bytes;
 				}
 			}
 
 			stats.reusedPacks = Collections.unmodifiableList(cachedPacks);
 			for (CachedPack pack : unwrittenCachedPacks) {
 				long deltaCnt = pack.getDeltaCount();
 				stats.reusedObjects += pack.getObjectCount();
 				stats.reusedDeltas += deltaCnt;
 				stats.totalDeltas += deltaCnt;
 				reuseSupport.copyPackAsIs(out, pack);
 			}
 			writeChecksum(out);
 			out.flush();
 		} finally {
 			stats.timeWriting = System.currentTimeMillis() - writeStart;
 			stats.depth = depth;
 
 			for (PackStatistics.ObjectType.Accumulator typeStat : stats.objectTypes) {
 				if (typeStat == null)
 					continue;
 				typeStat.cntDeltas += typeStat.reusedDeltas;
 				stats.reusedObjects += typeStat.reusedObjects;
 				stats.reusedDeltas += typeStat.reusedDeltas;
 				stats.totalDeltas += typeStat.cntDeltas;
 			}
 		}
 
 		stats.totalBytes = out.length();
 		reader.close();
 		endPhase(writeMonitor);
 	}
 
 	/**
 	 * Get statistics of what this PackWriter did in order to create the final
 	 * pack stream.
 	 *
 	 * @return description of what this PackWriter did in order to create the
 	 *         final pack stream. This should only be invoked after the calls to
 	 *         create the pack/index/bitmap have completed.
 	 */
 	public PackStatistics getStatistics() {
 		return new PackStatistics(stats);
 	}
 
 	/**
 	 * Get snapshot of the current state of this PackWriter.
 	 *
 	 * @return snapshot of the current state of this PackWriter.
 	 */
 	public State getState() {
 		return state.snapshot();
 	}
 
 	/**
 	 * {@inheritDoc}
 	 * <p>
 	 * Release all resources used by this writer.
 	 */
 	@Override
 	public void close() {
 		reader.close();
 		if (myDeflater != null) {
 			myDeflater.end();
 			myDeflater = null;
 		}
 		instances.remove(selfRef);
 	}
 
 	private void searchForReuse(ProgressMonitor monitor) throws IOException {
 		long cnt = 0;
 		cnt += objectsLists[OBJ_COMMIT].size();
 		cnt += objectsLists[OBJ_TREE].size();
 		cnt += objectsLists[OBJ_BLOB].size();
 		cnt += objectsLists[OBJ_TAG].size();
 
 		long start = System.currentTimeMillis();
 		searchForReuseStartTimeEpoc = start;
 		beginPhase(PackingPhase.FINDING_SOURCES, monitor, cnt);
 		if (cnt <= 4096) {
 			// For small object counts, do everything as one list.
 			BlockList<ObjectToPack> tmp = new BlockList<>((int) cnt);
 			tmp.addAll(objectsLists[OBJ_TAG]);
 			tmp.addAll(objectsLists[OBJ_COMMIT]);
 			tmp.addAll(objectsLists[OBJ_TREE]);
 			tmp.addAll(objectsLists[OBJ_BLOB]);
 			searchForReuse(monitor, tmp);
 			if (pruneCurrentObjectList) {
 				// If the list was pruned, we need to re-prune the main lists.
 				pruneEdgesFromObjectList(objectsLists[OBJ_COMMIT]);
 				pruneEdgesFromObjectList(objectsLists[OBJ_TREE]);
 				pruneEdgesFromObjectList(objectsLists[OBJ_BLOB]);
 				pruneEdgesFromObjectList(objectsLists[OBJ_TAG]);
 			}
 		} else {
 			searchForReuse(monitor, objectsLists[OBJ_TAG]);
 			searchForReuse(monitor, objectsLists[OBJ_COMMIT]);
 			searchForReuse(monitor, objectsLists[OBJ_TREE]);
 			searchForReuse(monitor, objectsLists[OBJ_BLOB]);
 		}
 		endPhase(monitor);
 		stats.timeSearchingForReuse = System.currentTimeMillis() - start;
 
 		if (config.isReuseDeltas() && config.getCutDeltaChains()) {
 			cutDeltaChains(objectsLists[OBJ_TREE]);
 			cutDeltaChains(objectsLists[OBJ_BLOB]);
 		}
 	}
 
 	private void searchForReuse(ProgressMonitor monitor, List<ObjectToPack> list)
 			throws IOException, MissingObjectException {
 		pruneCurrentObjectList = false;
 		reuseSupport.selectObjectRepresentation(this, monitor, list);
 		if (pruneCurrentObjectList)
 			pruneEdgesFromObjectList(list);
 	}
 
 	private void cutDeltaChains(BlockList<ObjectToPack> list)
 			throws IOException {
 		int max = config.getMaxDeltaDepth();
 		for (int idx = list.size() - 1; idx >= 0; idx--) {
 			int d = 0;
 			ObjectToPack b = list.get(idx).getDeltaBase();
 			while (b != null) {
 				if (d < b.getChainLength())
 					break;
 				b.setChainLength(++d);
 				if (d >= max && b.isDeltaRepresentation()) {
 					reselectNonDelta(b);
 					break;
 				}
 				b = b.getDeltaBase();
 			}
 		}
 		if (config.isDeltaCompress()) {
 			for (ObjectToPack otp : list)
 				otp.clearChainLength();
 		}
 	}
 
 	private void searchForDeltas(ProgressMonitor monitor)
 			throws MissingObjectException, IncorrectObjectTypeException,
 			IOException {
 		// Commits and annotated tags tend to have too many differences to
 		// really benefit from delta compression. Consequently just don't
 		// bother examining those types here.
 		//
 		ObjectToPack[] list = new ObjectToPack[
 				  objectsLists[OBJ_TREE].size()
 				+ objectsLists[OBJ_BLOB].size()
 				+ edgeObjects.size()];
 		int cnt = 0;
 		cnt = findObjectsNeedingDelta(list, cnt, OBJ_TREE);
 		cnt = findObjectsNeedingDelta(list, cnt, OBJ_BLOB);
 		if (cnt == 0)
 			return;
 		int nonEdgeCnt = cnt;
 
 		// Queue up any edge objects that we might delta against.  We won't
 		// be sending these as we assume the other side has them, but we need
 		// them in the search phase below.
 		//
 		for (ObjectToPack eo : edgeObjects) {
 			eo.setWeight(0);
 			list[cnt++] = eo;
 		}
 
 		// Compute the sizes of the objects so we can do a proper sort.
 		// We let the reader skip missing objects if it chooses. For
 		// some readers this can be a huge win. We detect missing objects
 		// by having set the weights above to 0 and allowing the delta
 		// search code to discover the missing object and skip over it, or
 		// abort with an exception if we actually had to have it.
 		//
 		final long sizingStart = System.currentTimeMillis();
 		beginPhase(PackingPhase.GETTING_SIZES, monitor, cnt);
 		AsyncObjectSizeQueue<ObjectToPack> sizeQueue = reader.getObjectSize(
 				Arrays.<ObjectToPack> asList(list).subList(0, cnt), false);
 		try {
 			final long limit = Math.min(
 					config.getBigFileThreshold(),
 					Integer.MAX_VALUE);
 			for (;;) {
 				try {
 					if (!sizeQueue.next())
 						break;
 				} catch (MissingObjectException notFound) {
 					monitor.update(1);
 					if (ignoreMissingUninteresting) {
 						ObjectToPack otp = sizeQueue.getCurrent();
 						if (otp != null && otp.isEdge()) {
 							otp.setDoNotDelta();
 							continue;
 						}
 
 						otp = objectsMap.get(notFound.getObjectId());
 						if (otp != null && otp.isEdge()) {
 							otp.setDoNotDelta();
 							continue;
 						}
 					}
 					throw notFound;
 				}
 
 				ObjectToPack otp = sizeQueue.getCurrent();
 				if (otp == null)
 					otp = objectsMap.get(sizeQueue.getObjectId());
 
 				long sz = sizeQueue.getSize();
 				if (DeltaIndex.BLKSZ < sz && sz < limit)
 					otp.setWeight((int) sz);
 				else
 					otp.setDoNotDelta(); // too small, or too big
 				monitor.update(1);
 			}
 		} finally {
 			sizeQueue.release();
 		}
 		endPhase(monitor);
 		stats.timeSearchingForSizes = System.currentTimeMillis() - sizingStart;
 
 		// Sort the objects by path hash so like files are near each other,
 		// and then by size descending so that bigger files are first. This
 		// applies "Linus' Law" which states that newer files tend to be the
 		// bigger ones, because source files grow and hardly ever shrink.
 		//
 		Arrays.sort(list, 0, cnt, (ObjectToPack a, ObjectToPack b) -> {
 			int cmp = (a.isDoNotDelta() ? 1 : 0) - (b.isDoNotDelta() ? 1 : 0);
 			if (cmp != 0) {
 				return cmp;
 			}
 
 			cmp = a.getType() - b.getType();
 			if (cmp != 0) {
 				return cmp;
 			}
 
 			cmp = (a.getPathHash() >>> 1) - (b.getPathHash() >>> 1);
 			if (cmp != 0) {
 				return cmp;
 			}
 
 			cmp = (a.getPathHash() & 1) - (b.getPathHash() & 1);
 			if (cmp != 0) {
 				return cmp;
 			}
 
 			cmp = (a.isEdge() ? 0 : 1) - (b.isEdge() ? 0 : 1);
 			if (cmp != 0) {
 				return cmp;
 			}
 
 			return b.getWeight() - a.getWeight();
 		});
 
 		// Above we stored the objects we cannot delta onto the end.
 		// Remove them from the list so we don't waste time on them.
 		while (0 < cnt && list[cnt - 1].isDoNotDelta()) {
 			if (!list[cnt - 1].isEdge())
 				nonEdgeCnt--;
 			cnt--;
 		}
 		if (cnt == 0)
 			return;
 
 		final long searchStart = System.currentTimeMillis();
 		searchForDeltas(monitor, list, cnt);
 		stats.deltaSearchNonEdgeObjects = nonEdgeCnt;
 		stats.timeCompressing = System.currentTimeMillis() - searchStart;
 
 		for (int i = 0; i < cnt; i++)
 			if (!list[i].isEdge() && list[i].isDeltaRepresentation())
 				stats.deltasFound++;
 	}
 
 	private int findObjectsNeedingDelta(ObjectToPack[] list, int cnt, int type) {
 		for (ObjectToPack otp : objectsLists[type]) {
 			if (otp.isDoNotDelta()) // delta is disabled for this path
 				continue;
 			if (otp.isDeltaRepresentation()) // already reusing a delta
 				continue;
 			otp.setWeight(0);
 			list[cnt++] = otp;
 		}
 		return cnt;
 	}
 
 	private void reselectNonDelta(ObjectToPack otp) throws IOException {
 		otp.clearDeltaBase();
 		otp.clearReuseAsIs();
 		boolean old = reuseDeltas;
 		reuseDeltas = false;
 		reuseSupport.selectObjectRepresentation(this,
 				NullProgressMonitor.INSTANCE,
 				Collections.singleton(otp));
 		reuseDeltas = old;
 	}
 
 	private void searchForDeltas(final ProgressMonitor monitor,
 			final ObjectToPack[] list, final int cnt)
 			throws MissingObjectException, IncorrectObjectTypeException,
 			LargeObjectException, IOException {
 		int threads = config.getThreads();
 		if (threads == 0)
 			threads = Runtime.getRuntime().availableProcessors();
 		if (threads <= 1 || cnt <= config.getDeltaSearchWindowSize())
 			singleThreadDeltaSearch(monitor, list, cnt);
 		else
 			parallelDeltaSearch(monitor, list, cnt, threads);
 	}
 
 	private void singleThreadDeltaSearch(ProgressMonitor monitor,
 			ObjectToPack[] list, int cnt) throws IOException {
 		long totalWeight = 0;
 		for (int i = 0; i < cnt; i++) {
 			ObjectToPack o = list[i];
 			totalWeight += DeltaTask.getAdjustedWeight(o);
 		}
 
 		long bytesPerUnit = 1;
 		while (DeltaTask.MAX_METER <= (totalWeight / bytesPerUnit))
 			bytesPerUnit <<= 10;
 		int cost = (int) (totalWeight / bytesPerUnit);
 		if (totalWeight % bytesPerUnit != 0)
 			cost++;
 
 		beginPhase(PackingPhase.COMPRESSING, monitor, cost);
 		new DeltaWindow(config, new DeltaCache(config), reader,
 				monitor, bytesPerUnit,
 				list, 0, cnt).search();
 		endPhase(monitor);
 	}
 
 	@SuppressWarnings("Finally")
 	private void parallelDeltaSearch(ProgressMonitor monitor,
 			ObjectToPack[] list, int cnt, int threads) throws IOException {
 		DeltaCache dc = new ThreadSafeDeltaCache(config);
 		ThreadSafeProgressMonitor pm = new ThreadSafeProgressMonitor(monitor);
 		DeltaTask.Block taskBlock = new DeltaTask.Block(threads, config,
 				reader, dc, pm,
 				list, 0, cnt);
 		taskBlock.partitionTasks();
 		beginPhase(PackingPhase.COMPRESSING, monitor, taskBlock.cost());
 		pm.startWorkers(taskBlock.tasks.size());
 
 		Executor executor = config.getExecutor();
 		final List<Throwable> errors =
 				Collections.synchronizedList(new ArrayList<>(threads));
 		if (executor instanceof ExecutorService) {
 			// Caller supplied us a service, use it directly.
 			runTasks((ExecutorService) executor, pm, taskBlock, errors);
 		} else if (executor == null) {
 			// Caller didn't give us a way to run the tasks, spawn up a
 			// temporary thread pool and make sure it tears down cleanly.
 			ExecutorService pool = Executors.newFixedThreadPool(threads);
 			Throwable e1 = null;
 			try {
 				runTasks(pool, pm, taskBlock, errors);
 			} catch (Exception e) {
 				e1 = e;
 			} finally {
 				pool.shutdown();
 				for (;;) {
 					try {
 						if (pool.awaitTermination(60, TimeUnit.SECONDS)) {
 							break;
 						}
 					} catch (InterruptedException e) {
 						if (e1 != null) {
 							e.addSuppressed(e1);
 						}
 						throw new IOException(JGitText
 								.get().packingCancelledDuringObjectsWriting, e);
 					}
 				}
 			}
 		} else {
 			// The caller gave us an executor, but it might not do
 			// asynchronous execution.  Wrap everything and hope it
 			// can schedule these for us.
 			for (DeltaTask task : taskBlock.tasks) {
 				executor.execute(() -> {
 					try {
 						task.call();
 					} catch (Throwable failure) {
 						errors.add(failure);
 					}
 				});
 			}
 			try {
 				pm.waitForCompletion();
 			} catch (InterruptedException ie) {
 				// We can't abort the other tasks as we have no handle.
 				// Cross our fingers and just break out anyway.
 				//
 				throw new IOException(
 						JGitText.get().packingCancelledDuringObjectsWriting,
 						ie);
 			}
 		}
 
 		// If any task threw an error, try to report it back as
 		// though we weren't using a threaded search algorithm.
 		//
 		if (!errors.isEmpty()) {
 			Throwable err = errors.get(0);
 			if (err instanceof Error)
 				throw (Error) err;
 			if (err instanceof RuntimeException)
 				throw (RuntimeException) err;
 			if (err instanceof IOException)
 				throw (IOException) err;
 
 			throw new IOException(err.getMessage(), err);
 		}
 		endPhase(monitor);
 	}
 
 	private static void runTasks(ExecutorService pool,
 			ThreadSafeProgressMonitor pm,
 			DeltaTask.Block tb, List<Throwable> errors) throws IOException {
 		List<Future<?>> futures = new ArrayList<>(tb.tasks.size());
 		for (DeltaTask task : tb.tasks)
 			futures.add(pool.submit(task));
 
 		try {
 			pm.waitForCompletion();
 			for (Future<?> f : futures) {
 				try {
 					f.get();
 				} catch (ExecutionException failed) {
 					errors.add(failed.getCause());
 				}
 			}
 		} catch (InterruptedException ie) {
 			for (Future<?> f : futures)
 				f.cancel(true);
 			throw new IOException(
 					JGitText.get().packingCancelledDuringObjectsWriting, ie);
 		}
 	}
 
 	private void writeObjects(PackOutputStream out) throws IOException {
 		writeObjects(out, objectsLists[OBJ_COMMIT]);
 		writeObjects(out, objectsLists[OBJ_TAG]);
 		writeObjects(out, objectsLists[OBJ_TREE]);
 		writeObjects(out, objectsLists[OBJ_BLOB]);
 	}
 
 	private void writeObjects(PackOutputStream out, List<ObjectToPack> list)
 			throws IOException {
 		if (list.isEmpty())
 			return;
 
 		typeStats = stats.objectTypes[list.get(0).getType()];
 		long beginOffset = out.length();
 
 		if (reuseSupport != null) {
 			reuseSupport.writeObjects(out, list);
 		} else {
 			for (ObjectToPack otp : list)
 				out.writeObject(otp);
 		}
 
 		typeStats.bytes += out.length() - beginOffset;
 		typeStats.cntObjects = list.size();
 	}
 
 	void writeObject(PackOutputStream out, ObjectToPack otp) throws IOException {
 		if (!otp.isWritten())
 			writeObjectImpl(out, otp);
 	}
 
 	private void writeObjectImpl(PackOutputStream out, ObjectToPack otp)
 			throws IOException {
 		if (otp.wantWrite()) {
 			// A cycle exists in this delta chain. This should only occur if a
 			// selected object representation disappeared during writing
 			// (for example due to a concurrent repack) and a different base
 			// was chosen, forcing a cycle. Select something other than a
 			// delta, and write this object.
 			reselectNonDelta(otp);
 		}
 		otp.markWantWrite();
 
 		while (otp.isReuseAsIs()) {
 			writeBase(out, otp.getDeltaBase());
 			if (otp.isWritten())
 				return; // Delta chain cycle caused this to write already.
 
 			crc32.reset();
 			otp.setOffset(out.length());
 			try {
 				reuseSupport.copyObjectAsIs(out, otp, reuseValidate);
 				out.endObject();
 				otp.setCRC((int) crc32.getValue());
 				typeStats.reusedObjects++;
 				if (otp.isDeltaRepresentation()) {
 					typeStats.reusedDeltas++;
 					typeStats.deltaBytes += out.length() - otp.getOffset();
 				}
 				return;
 			} catch (StoredObjectRepresentationNotAvailableException gone) {
 				if (otp.getOffset() == out.length()) {
 					otp.setOffset(0);
 					otp.clearDeltaBase();
 					otp.clearReuseAsIs();
 					reuseSupport.selectObjectRepresentation(this,
 							NullProgressMonitor.INSTANCE,
 							Collections.singleton(otp));
 					continue;
 				}
 				// Object writing already started, we cannot recover.
 				//
 				CorruptObjectException coe;
 				coe = new CorruptObjectException(otp, ""); //$NON-NLS-1$
 				coe.initCause(gone);
 				throw coe;
 			}
 		}
 
 		// If we reached here, reuse wasn't possible.
 		//
 		if (otp.isDeltaRepresentation()) {
 			writeDeltaObjectDeflate(out, otp);
 		} else {
 			writeWholeObjectDeflate(out, otp);
 		}
 		out.endObject();
 		otp.setCRC((int) crc32.getValue());
 	}
 
 	private void writeBase(PackOutputStream out, ObjectToPack base)
 			throws IOException {
 		if (base != null && !base.isWritten() && !base.isEdge())
 			writeObjectImpl(out, base);
 	}
 
 	private void writeWholeObjectDeflate(PackOutputStream out,
 			final ObjectToPack otp) throws IOException {
 		final Deflater deflater = deflater();
 		final ObjectLoader ldr = reader.open(otp, otp.getType());
 
 		crc32.reset();
 		otp.setOffset(out.length());
 		out.writeHeader(otp, ldr.getSize());
 
 		deflater.reset();
 		DeflaterOutputStream dst = new DeflaterOutputStream(out, deflater);
 		ldr.copyTo(dst);
 		dst.finish();
 	}
 
 	private void writeDeltaObjectDeflate(PackOutputStream out,
 			final ObjectToPack otp) throws IOException {
 		writeBase(out, otp.getDeltaBase());
 
 		crc32.reset();
 		otp.setOffset(out.length());
 
 		DeltaCache.Ref ref = otp.popCachedDelta();
 		if (ref != null) {
 			byte[] zbuf = ref.get();
 			if (zbuf != null) {
 				out.writeHeader(otp, otp.getCachedSize());
 				out.write(zbuf);
 				typeStats.cntDeltas++;
 				typeStats.deltaBytes += out.length() - otp.getOffset();
 				return;
 			}
 		}
 
 		try (TemporaryBuffer.Heap delta = delta(otp)) {
 			out.writeHeader(otp, delta.length());
 
 			Deflater deflater = deflater();
 			deflater.reset();
 			DeflaterOutputStream dst = new DeflaterOutputStream(out, deflater);
 			delta.writeTo(dst, null);
 			dst.finish();
 		}
 		typeStats.cntDeltas++;
 		typeStats.deltaBytes += out.length() - otp.getOffset();
 	}
 
 	private TemporaryBuffer.Heap delta(ObjectToPack otp)
 			throws IOException {
 		DeltaIndex index = new DeltaIndex(buffer(otp.getDeltaBaseId()));
 		byte[] res = buffer(otp);
 
 		// We never would have proposed this pair if the delta would be
 		// larger than the unpacked version of the object. So using it
 		// as our buffer limit is valid: we will never reach it.
 		//
 		TemporaryBuffer.Heap delta = new TemporaryBuffer.Heap(res.length);
 		index.encode(delta, res);
 		return delta;
 	}
 
 	private byte[] buffer(AnyObjectId objId) throws IOException {
 		return buffer(config, reader, objId);
 	}
 
 	static byte[] buffer(PackConfig config, ObjectReader or, AnyObjectId objId)
 			throws IOException {
 		// PackWriter should have already pruned objects that
 		// are above the big file threshold, so our chances of
 		// the object being below it are very good. We really
 		// shouldn't be here, unless the implementation is odd.
 
 		return or.open(objId).getCachedBytes(config.getBigFileThreshold());
 	}
 
 	private Deflater deflater() {
 		if (myDeflater == null)
 			myDeflater = new Deflater(config.getCompressionLevel());
 		return myDeflater;
 	}
 
 	private void writeChecksum(PackOutputStream out) throws IOException {
 		packcsum = out.getDigest();
 		out.write(packcsum);
 	}
 
 	private void findObjectsToPack(@NonNull ProgressMonitor countingMonitor,
 			@NonNull ObjectWalk walker, @NonNull Set<? extends ObjectId> want,
 			@NonNull Set<? extends ObjectId> have,
 			@NonNull Set<? extends ObjectId> noBitmaps) throws IOException {
 		final long countingStart = System.currentTimeMillis();
 		beginPhase(PackingPhase.COUNTING, countingMonitor, ProgressMonitor.UNKNOWN);
 
 		stats.interestingObjects = Collections.unmodifiableSet(new HashSet<ObjectId>(want));
 		stats.uninterestingObjects = Collections.unmodifiableSet(new HashSet<ObjectId>(have));
 		excludeFromBitmapSelection = noBitmaps;
 
 		canBuildBitmaps = config.isBuildBitmaps()
 				&& !shallowPack
 				&& have.isEmpty()
 				&& (excludeInPacks == null || excludeInPacks.length == 0);
 		if (!shallowPack && useBitmaps) {
 			BitmapIndex bitmapIndex = reader.getBitmapIndex();
 			if (bitmapIndex != null) {
 				BitmapWalker bitmapWalker = new BitmapWalker(
 						walker, bitmapIndex, countingMonitor);
 				findObjectsToPackUsingBitmaps(bitmapWalker, want, have);
 				endPhase(countingMonitor);
 				stats.timeCounting = System.currentTimeMillis() - countingStart;
 				stats.bitmapIndexMisses = bitmapWalker.getCountOfBitmapIndexMisses();
 				return;
 			}
 		}
 
 		List<ObjectId> all = new ArrayList<>(want.size() + have.size());
 		all.addAll(want);
 		all.addAll(have);
 
 		final RevFlag include = walker.newFlag("include"); //$NON-NLS-1$
 		final RevFlag added = walker.newFlag("added"); //$NON-NLS-1$
 
 		walker.carry(include);
 
 		int haveEst = have.size();
 		if (have.isEmpty()) {
 			walker.sort(RevSort.COMMIT_TIME_DESC);
 		} else {
 			walker.sort(RevSort.TOPO);
 			if (thin)
 				walker.sort(RevSort.BOUNDARY, true);
 		}
 
 		List<RevObject> wantObjs = new ArrayList<>(want.size());
 		List<RevObject> haveObjs = new ArrayList<>(haveEst);
 		List<RevTag> wantTags = new ArrayList<>(want.size());
 
 		// Retrieve the RevWalk's versions of "want" and "have" objects to
 		// maintain any state previously set in the RevWalk.
 		AsyncRevObjectQueue q = walker.parseAny(all, true);
 		try {
 			for (;;) {
 				try {
 					RevObject o = q.next();
 					if (o == null)
 						break;
 					if (have.contains(o))
 						haveObjs.add(o);
 					if (want.contains(o)) {
 						o.add(include);
 						wantObjs.add(o);
 						if (o instanceof RevTag)
 							wantTags.add((RevTag) o);
 					}
 				} catch (MissingObjectException e) {
 					if (ignoreMissingUninteresting
 							&& have.contains(e.getObjectId()))
 						continue;
 					throw e;
 				}
 			}
 		} finally {
 			q.release();
 		}
 
 		if (!wantTags.isEmpty()) {
 			all = new ArrayList<>(wantTags.size());
 			for (RevTag tag : wantTags)
 				all.add(tag.getObject());
 			q = walker.parseAny(all, true);
 			try {
 				while (q.next() != null) {
 					// Just need to pop the queue item to parse the object.
 				}
 			} finally {
 				q.release();
 			}
 		}
 
 		if (walker instanceof DepthWalk.ObjectWalk) {
 			DepthWalk.ObjectWalk depthWalk = (DepthWalk.ObjectWalk) walker;
 			for (RevObject obj : wantObjs) {
 				depthWalk.markRoot(obj);
 			}
 			// Mark the tree objects associated with "have" commits as
 			// uninteresting to avoid writing redundant blobs. A normal RevWalk
 			// lazily propagates the "uninteresting" state from a commit to its
 			// tree during the walk, but DepthWalks can terminate early so
 			// preemptively propagate that state here.
 			for (RevObject obj : haveObjs) {
 				if (obj instanceof RevCommit) {
 					RevTree t = ((RevCommit) obj).getTree();
 					depthWalk.markUninteresting(t);
 				}
 			}
 
 			if (unshallowObjects != null) {
 				for (ObjectId id : unshallowObjects) {
 					depthWalk.markUnshallow(walker.parseAny(id));
 				}
 			}
 		} else {
 			for (RevObject obj : wantObjs)
 				walker.markStart(obj);
 		}
 		for (RevObject obj : haveObjs)
 			walker.markUninteresting(obj);
 
 		final int maxBases = config.getDeltaSearchWindowSize();
 		Set<RevTree> baseTrees = new HashSet<>();
 		BlockList<RevCommit> commits = new BlockList<>();
 		Set<ObjectId> roots = new HashSet<>();
 		RevCommit c;
 		while ((c = walker.next()) != null) {
 			if (exclude(c))
 				continue;
 			if (c.has(RevFlag.UNINTERESTING)) {
 				if (baseTrees.size() <= maxBases)
 					baseTrees.add(c.getTree());
 				continue;
 			}
 
 			commits.add(c);
 			if (c.getParentCount() == 0) {
 				roots.add(c.copy());
 			}
 			countingMonitor.update(1);
 		}
 		stats.rootCommits = Collections.unmodifiableSet(roots);
 
 		if (shallowPack) {
 			for (RevCommit cmit : commits) {
 				addObject(cmit, 0);
 			}
 		} else {
 			int commitCnt = 0;
 			boolean putTagTargets = false;
 			for (RevCommit cmit : commits) {
 				if (!cmit.has(added)) {
 					cmit.add(added);
 					addObject(cmit, 0);
 					commitCnt++;
 				}
 
 				for (int i = 0; i < cmit.getParentCount(); i++) {
 					RevCommit p = cmit.getParent(i);
 					if (!p.has(added) && !p.has(RevFlag.UNINTERESTING)
 							&& !exclude(p)) {
 						p.add(added);
 						addObject(p, 0);
 						commitCnt++;
 					}
 				}
 
 				if (!putTagTargets && 4096 < commitCnt) {
 					for (ObjectId id : tagTargets) {
 						RevObject obj = walker.lookupOrNull(id);
 						if (obj instanceof RevCommit
 								&& obj.has(include)
 								&& !obj.has(RevFlag.UNINTERESTING)
 								&& !obj.has(added)) {
 							obj.add(added);
 							addObject(obj, 0);
 						}
 					}
 					putTagTargets = true;
 				}
 			}
 		}
 		commits = null;
 
 		if (thin && !baseTrees.isEmpty()) {
 			BaseSearch bases = new BaseSearch(countingMonitor, baseTrees, //
 					objectsMap, edgeObjects, reader);
 			RevObject o;
 			while ((o = walker.nextObject()) != null) {
 				if (o.has(RevFlag.UNINTERESTING))
 					continue;
 				if (exclude(o))
 					continue;
 
 				int pathHash = walker.getPathHashCode();
 				byte[] pathBuf = walker.getPathBuffer();
 				int pathLen = walker.getPathLength();
 				bases.addBase(o.getType(), pathBuf, pathLen, pathHash);
 				if (!depthSkip(o, walker)) {
 					filterAndAddObject(o, o.getType(), pathHash, want);
 				}
 				countingMonitor.update(1);
 			}
 		} else {
 			RevObject o;
 			while ((o = walker.nextObject()) != null) {
 				if (o.has(RevFlag.UNINTERESTING))
 					continue;
 				if (exclude(o))
 					continue;
 				if (!depthSkip(o, walker)) {
 					filterAndAddObject(o, o.getType(), walker.getPathHashCode(),
 									   want);
 				}
 				countingMonitor.update(1);
 			}
 		}
 
 		for (CachedPack pack : cachedPacks)
 			countingMonitor.update((int) pack.getObjectCount());
 		endPhase(countingMonitor);
 		stats.timeCounting = System.currentTimeMillis() - countingStart;
 		stats.bitmapIndexMisses = -1;
 	}
 
 	private void findObjectsToPackUsingBitmaps(
 			BitmapWalker bitmapWalker, Set<? extends ObjectId> want,
 			Set<? extends ObjectId> have)
 			throws MissingObjectException, IncorrectObjectTypeException,
 			IOException {
 		BitmapBuilder haveBitmap = bitmapWalker.findObjects(have, null, true);
 		BitmapBuilder wantBitmap = bitmapWalker.findObjects(want, haveBitmap,
 				false);
 		BitmapBuilder needBitmap = wantBitmap.andNot(haveBitmap);
 
 		if (useCachedPacks && reuseSupport != null && !reuseValidate
 				&& (excludeInPacks == null || excludeInPacks.length == 0))
 			cachedPacks.addAll(
 					reuseSupport.getCachedPacksAndUpdate(needBitmap));
 
 		for (BitmapObject obj : needBitmap) {
 			ObjectId objectId = obj.getObjectId();
 			if (exclude(objectId)) {
 				needBitmap.remove(objectId);
 				continue;
 			}
 			filterAndAddObject(objectId, obj.getType(), 0, want);
 		}
 
 		if (thin)
 			haveObjects = haveBitmap;
 	}
 
 	private static void pruneEdgesFromObjectList(List<ObjectToPack> list) {
 		final int size = list.size();
 		int src = 0;
 		int dst = 0;
 
 		for (; src < size; src++) {
 			ObjectToPack obj = list.get(src);
 			if (obj.isEdge())
 				continue;
 			if (dst != src)
 				list.set(dst, obj);
 			dst++;
 		}
 
 		while (dst < list.size())
 			list.remove(list.size() - 1);
 	}
 
 	/**
 	 * Include one object to the output file.
 	 * <p>
 	 * Objects are written in the order they are added. If the same object is
 	 * added twice, it may be written twice, creating a larger than necessary
 	 * file.
 	 *
 	 * @param object
 	 *            the object to add.
 	 * @throws org.eclipse.jgit.errors.IncorrectObjectTypeException
 	 *             the object is an unsupported type.
 	 */
 	public void addObject(RevObject object)
 			throws IncorrectObjectTypeException {
 		if (!exclude(object))
 			addObject(object, 0);
 	}
 
 	private void addObject(RevObject object, int pathHashCode) {
 		addObject(object, object.getType(), pathHashCode);
 	}
 
 	private void addObject(
 			final AnyObjectId src, final int type, final int pathHashCode) {
 		final ObjectToPack otp;
 		if (reuseSupport != null)
 			otp = reuseSupport.newObjectToPack(src, type);
 		else
 			otp = new ObjectToPack(src, type);
 		otp.setPathHash(pathHashCode);
 		objectsLists[type].add(otp);
 		objectsMap.add(otp);
 	}
 
 	/**
 	 * Determines if the object should be omitted from the pack as a result of
 	 * its depth (probably because of the tree:<depth> filter).
 	 * <p>
 	 * Causes {@code walker} to skip traversing the current tree, which ought to
 	 * have just started traversal, assuming this method is called as soon as a
 	 * new depth is reached.
 	 * <p>
 	 * This method increments the {@code treesTraversed} statistic.
 	 *
 	 * @param obj
 	 *            the object to check whether it should be omitted.
 	 * @param walker
 	 *            the walker being used for traveresal.
 	 * @return whether the given object should be skipped.
 	 */
 	private boolean depthSkip(@NonNull RevObject obj, ObjectWalk walker) {
 		long treeDepth = walker.getTreeDepth();
 
 		// Check if this object needs to be rejected because it is a tree or
 		// blob that is too deep from the root tree.
 
 		// A blob is considered one level deeper than the tree that contains it.
 		if (obj.getType() == OBJ_BLOB) {
 			treeDepth++;
 		} else {
 			stats.treesTraversed++;
 		}
 
 		if (filterSpec.getTreeDepthLimit() < 0 ||
 			treeDepth <= filterSpec.getTreeDepthLimit()) {
 			return false;
 		}
 
 		walker.skipTree();
 		return true;
 	}
 
 	// Adds the given object as an object to be packed, first performing
 	// filtering on blobs at or exceeding a given size.
 	private void filterAndAddObject(@NonNull AnyObjectId src, int type,
 			int pathHashCode, @NonNull Set<? extends AnyObjectId> want)
 			throws IOException {
 
 		// Check if this object needs to be rejected, doing the cheaper
 		// checks first.
 		boolean reject =
 			(!filterSpec.allowsType(type) && !want.contains(src)) ||
 			(filterSpec.getBlobLimit() >= 0 &&
 				type == OBJ_BLOB &&
 				!want.contains(src) &&
 				reader.getObjectSize(src, OBJ_BLOB) > filterSpec.getBlobLimit());
 		if (!reject) {
 			addObject(src, type, pathHashCode);
 		}
 	}
 
 	private boolean exclude(AnyObjectId objectId) {
 		if (excludeInPacks == null)
 			return false;
 		if (excludeInPackLast.contains(objectId))
 			return true;
 		for (ObjectIdSet idx : excludeInPacks) {
 			if (idx.contains(objectId)) {
 				excludeInPackLast = idx;
 				return true;
 			}
 		}
 		return false;
 	}
 
 	/**
 	 * Select an object representation for this writer.
 	 * <p>
 	 * An {@link org.eclipse.jgit.lib.ObjectReader} implementation should invoke
 	 * this method once for each representation available for an object, to
 	 * allow the writer to find the most suitable one for the output.
 	 *
 	 * @param otp
 	 *            the object being packed.
 	 * @param next
 	 *            the next available representation from the repository.
 	 */
 	public void select(ObjectToPack otp, StoredObjectRepresentation next) {
 		int nFmt = next.getFormat();
 
 		if (!cachedPacks.isEmpty()) {
 			if (otp.isEdge())
 				return;
 			if (nFmt == PACK_WHOLE || nFmt == PACK_DELTA) {
 				for (CachedPack pack : cachedPacks) {
 					if (pack.hasObject(otp, next)) {
 						otp.setEdge();
 						otp.clearDeltaBase();
 						otp.clearReuseAsIs();
 						pruneCurrentObjectList = true;
 						return;
 					}
 				}
 			}
 		}
 
 		if (nFmt == PACK_DELTA && reuseDeltas && reuseDeltaFor(otp)) {
 			ObjectId baseId = next.getDeltaBase();
 			ObjectToPack ptr = objectsMap.get(baseId);
 			if (ptr != null && !ptr.isEdge()) {
 				otp.setDeltaBase(ptr);
 				otp.setReuseAsIs();
 			} else if (thin && have(ptr, baseId)) {
 				otp.setDeltaBase(baseId);
 				otp.setReuseAsIs();
 			} else {
 				otp.clearDeltaBase();
 				otp.clearReuseAsIs();
 			}
 		} else if (nFmt == PACK_WHOLE && config.isReuseObjects()) {
 			int nWeight = next.getWeight();
 			if (otp.isReuseAsIs() && !otp.isDeltaRepresentation()) {
 				// We've chosen another PACK_WHOLE format for this object,
 				// choose the one that has the smaller compressed size.
 				//
 				if (otp.getWeight() <= nWeight)
 					return;
 			}
 			otp.clearDeltaBase();
 			otp.setReuseAsIs();
 			otp.setWeight(nWeight);
 		} else {
 			otp.clearDeltaBase();
 			otp.clearReuseAsIs();
 		}
 
 		otp.setDeltaAttempted(reuseDeltas && next.wasDeltaAttempted());
 		otp.select(next);
 	}
 
 	private final boolean have(ObjectToPack ptr, AnyObjectId objectId) {
 		return (ptr != null && ptr.isEdge())
 				|| (haveObjects != null && haveObjects.contains(objectId));
 	}
 
 	/**
 	 * Prepares the bitmaps to be written to the bitmap index file.
 	 * <p>
 	 * Bitmaps can be used to speed up fetches and clones by storing the entire
 	 * object graph at selected commits. Writing a bitmap index is an optional
 	 * feature that not all pack users may require.
 	 * <p>
 	 * Called after {@link #writeIndex(OutputStream)}.
 	 * <p>
 	 * To reduce memory internal state is cleared during this method, rendering
 	 * the PackWriter instance useless for anything further than a call to write
 	 * out the new bitmaps with {@link #writeBitmapIndex(OutputStream)}.
 	 *
 	 * @param pm
 	 *            progress monitor to report bitmap building work.
 	 * @return whether a bitmap index may be written.
 	 * @throws java.io.IOException
 	 *             when some I/O problem occur during reading objects.
 	 */
 	public boolean prepareBitmapIndex(ProgressMonitor pm) throws IOException {
 		if (!canBuildBitmaps || getObjectCount() > Integer.MAX_VALUE
 				|| !cachedPacks.isEmpty())
 			return false;
 
 		if (pm == null)
 			pm = NullProgressMonitor.INSTANCE;
 
 		int numCommits = objectsLists[OBJ_COMMIT].size();
 		List<ObjectToPack> byName = sortByName();
 		sortedByName = null;
 		objectsLists = null;
 		objectsMap = null;
 		writeBitmaps = new PackBitmapIndexBuilder(byName);
 		byName = null;
 
 		PackWriterBitmapPreparer bitmapPreparer = new PackWriterBitmapPreparer(
 				reader, writeBitmaps, pm, stats.interestingObjects, config);
 
 		Collection<BitmapCommit> selectedCommits = bitmapPreparer
 				.selectCommits(numCommits, excludeFromBitmapSelection);
 
 		beginPhase(PackingPhase.BUILDING_BITMAPS, pm, selectedCommits.size());
 
 		BitmapWalker walker = bitmapPreparer.newBitmapWalker();
 		AnyObjectId last = null;
 		for (BitmapCommit cmit : selectedCommits) {
 			if (!cmit.isReuseWalker()) {
 				walker = bitmapPreparer.newBitmapWalker();
 			}
 			BitmapBuilder bitmap = walker.findObjects(
 					Collections.singleton(cmit), null, false);
 
 			if (last != null && cmit.isReuseWalker() && !bitmap.contains(last))
 				throw new IllegalStateException(MessageFormat.format(
 						JGitText.get().bitmapMissingObject, cmit.name(),
 						last.name()));
 			last = BitmapCommit.copyFrom(cmit).build();
 			writeBitmaps.processBitmapForWrite(cmit, bitmap.build(),
 					cmit.getFlags());
 
 			// The bitmap walker should stop when the walk hits the previous
 			// commit, which saves time.
 			walker.setPrevCommit(last);
 			walker.setPrevBitmap(bitmap);
 
 			pm.update(1);
 		}
 
 		endPhase(pm);
 		return true;
 	}
 
 	private boolean reuseDeltaFor(ObjectToPack otp) {
 		int type = otp.getType();
 		if ((type & 2) != 0) // OBJ_TREE(2) or OBJ_BLOB(3)
 			return true;
 		if (type == OBJ_COMMIT)
 			return reuseDeltaCommits;
 		if (type == OBJ_TAG)
 			return false;
 		return true;
 	}
 
 	private class MutableState {
 		/** Estimated size of a single ObjectToPack instance. */
 		// Assume 64-bit pointers, since this is just an estimate.
 		private static final long OBJECT_TO_PACK_SIZE =
 				(2 * 8)               // Object header
 				+ (2 * 8) + (2 * 8)   // ObjectToPack fields
 				+ (8 + 8)             // PackedObjectInfo fields
 				+ 8                   // ObjectIdOwnerMap fields
 				+ 40                  // AnyObjectId fields
 				+ 8;                  // Reference in BlockList
 
 		private final long totalDeltaSearchBytes;
 
 		private volatile PackingPhase phase;
 
 		MutableState() {
 			phase = PackingPhase.COUNTING;
 			if (config.isDeltaCompress()) {
 				int threads = config.getThreads();
 				if (threads <= 0)
 					threads = Runtime.getRuntime().availableProcessors();
 				totalDeltaSearchBytes = (threads * config.getDeltaSearchMemoryLimit())
 						+ config.getBigFileThreshold();
 			} else
 				totalDeltaSearchBytes = 0;
 		}
 
 		State snapshot() {
 			long objCnt = 0;
 			BlockList<ObjectToPack>[] lists = objectsLists;
 			if (lists != null) {
 				objCnt += lists[OBJ_COMMIT].size();
 				objCnt += lists[OBJ_TREE].size();
 				objCnt += lists[OBJ_BLOB].size();
 				objCnt += lists[OBJ_TAG].size();
 				// Exclude CachedPacks.
 			}
 
 			long bytesUsed = OBJECT_TO_PACK_SIZE * objCnt;
 			PackingPhase curr = phase;
 			if (curr == PackingPhase.COMPRESSING)
 				bytesUsed += totalDeltaSearchBytes;
 			return new State(curr, bytesUsed);
 		}
 	}
 
 	/** Possible states that a PackWriter can be in. */
 	public enum PackingPhase {
 		/** Counting objects phase. */
 		COUNTING,
 
 		/** Getting sizes phase. */
 		GETTING_SIZES,
 
 		/** Finding sources phase. */
 		FINDING_SOURCES,
 
 		/** Compressing objects phase. */
 		COMPRESSING,
 
 		/** Writing objects phase. */
 		WRITING,
 
 		/** Building bitmaps phase. */
 		BUILDING_BITMAPS;
 	}
 
 	/** Summary of the current state of a PackWriter. */
 	public class State {
 		private final PackingPhase phase;
 
 		private final long bytesUsed;
 
 		State(PackingPhase phase, long bytesUsed) {
 			this.phase = phase;
 			this.bytesUsed = bytesUsed;
 		}
 
 		/** @return the PackConfig used to build the writer. */
 		public PackConfig getConfig() {
 			return config;
 		}
 
 		/** @return the current phase of the writer. */
 		public PackingPhase getPhase() {
 			return phase;
 		}
 
 		/** @return an estimate of the total memory used by the writer. */
 		public long estimateBytesUsed() {
 			return bytesUsed;
 		}
 
 		@SuppressWarnings("nls")
 		@Override
 		public String toString() {
 			return "PackWriter.State[" + phase + ", memory=" + bytesUsed + "]";
 		}
 	}
 
 	/**
 	 * Configuration related to the packfile URI feature.
 	 *
 	 * @since 5.5
 	 */
 	public static class PackfileUriConfig {
 		@NonNull
 		private final PacketLineOut pckOut;
 
 		@NonNull
 		private final Collection<String> protocolsSupported;
 
 		@NonNull
 		private final CachedPackUriProvider cachedPackUriProvider;
 
 		/**
 		 * @param pckOut where to write "packfile-uri" lines to (should
 		 *     output to the same stream as the one passed to
 		 *     PackWriter#writePack)
 		 * @param protocolsSupported list of protocols supported (e.g. "https")
 		 * @param cachedPackUriProvider provider of URIs corresponding
 		 *     to cached packs
 		 * @since 5.5
 		 */
 		public PackfileUriConfig(@NonNull PacketLineOut pckOut,
 				@NonNull Collection<String> protocolsSupported,
 				@NonNull CachedPackUriProvider cachedPackUriProvider) {
 			this.pckOut = pckOut;
 			this.protocolsSupported = protocolsSupported;
 			this.cachedPackUriProvider = cachedPackUriProvider;
 		}
 	}
 }